Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00246 ATGTTGCAGTTCCAAGCAGCTTCCATGAATCCAATGATTCAATTTTCACCTACTAAAACCAAATTCCCTTCTTCTTCTTCTTCTTCTTCACCATTTTTCTTCAGCAAAACAAAAACCTCTGTTTCTCAAACAGTTTCCATTAGTCAAGGTTACAAGATGGATGGGTTCCAAGATTTTGAACTCAAAGTTCGTGATTACGAGCTGGATCAATTCGGTGTAGTCAACAATGCCGTTTATGCAGATTATTGCTACCATGGTCGTCACGAATTGCTAGAAAGGATAGGAGTGAGTCGAGATGCAATTACTGAGAGAGGGGAATCGTTAGCACTATCAGATTTGTCGATGAAATTCCTTTCACCACTTAGAAGTGGAGACAGATTTGTTCTTAAAGTGAGGGTGGTGGGAGTCTCAAAGGTACGGATCTATGTTCATCACTTGATTTTCAAGCTTCCAAATATGGAGGCAATCTTAGATGCAAAGGCTACGGCAGTATGGGTTAATAAAAGCAATCGTCCAGTGCGACTCCCAGAAGAGCTTTTGTCAAAATTTGCTGATTATGTTGGGGAACAACGACAACAACATCACTTCAAAACAGAACAACATTAG 606 40.1 MLQFQAASMNPMIQFSPTKTKFPSSSSSSSPFFFSKTKTSVSQTVSISQGYKMDGFQDFELKVRDYELDQFGVVNNAVYADYCYHGRHELLERIGVSRDAITERGESLALSDLSMKFLSPLRSGDRFVLKVRVVGVSKVRIYVHHLIFKLPNMEAILDAKATAVWVNKSNRPVRLPEELLSKFADYVGEQRQQHHFKTEQH 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1621625 1622807 + MELO3C012259.2.1 Cme10g00246 339132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00246 201 Gene3D Hotdog Thioesterase 40 187 - -
Cme10g00246 201 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 53 190 IPR029069 -
Cme10g00246 201 Pfam Thioesterase-like superfamily 66 183 - -
Cme10g00246 201 CDD 4HBT 59 167 - -
Cme10g00246 201 PANTHER 4-HYDROXYBENZOYL-COA THIOESTERASE FAMILY MEMBER 22 192 - -
Cme10g00246 201 PANTHER ACYL-ACYL CARRIER PROTEIN THIOESTERASE ATL1, CHLOROPLASTIC-RELATED 22 192 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00246 - - - csv:101211726 286.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00245 Cme-Chr10:1618081 Cme10g00246 Cme-Chr10:1621625 3.99E-71 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g323 . . . Bda11g00190 . . . . . . . . . . . Cpe09g00312 . . . . . . . . . . . . . . . . . . . . Csa05g02625 Chy10g01161 Cme10g00246 . . . Bda11g00190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002243 1 4 1 1 1 2 4 1 1 1 2 2 2 3 2 2 2 1 3 2 1 2 3 5 5 1 2 2 1 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00246 Cme_Chr10 FPKM 48.4459 52.034657 39.870583 41.427872 76.459717 89.030975 79.407806 44.729126 48.171207 47.499245