Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00247 ATGGAGAAGAGAGTAATGGTGGCCATAGACGAGAGTGAGTATAGCTACTATGCCCTAATCTGGGTGCTTGAAAATCTTAAAGAATCCATAGCCAGTTCCCCACTTTTCCTCTTCACGGCTCTACCTCCGCCGTCCACCACTTACACCTCCGGCCTCGCTCGCTCATATTTCCCACTTCCATCCAATACGGAGTTTGTTCATACTATTCAAGAGAATGATAAGAAACTTAGATGCGGTCTTCTTGAGAAAGCAAAGGATATATGTGCTGGAAGGGGGGTGGCTGCTATATCCATCACAGAAGATGGGGACCCTGGAACGACCATATGCGATACGGTTGAAAAGCTGAATATAAGTTTGCTTGTTTTGGGTGATCGTGGCCTTGGGAGGATTAAGAGAGCTCTTATAGGGAGTGTGAGCAACTATTGCGTTCAAAATGCCAAGTGTCCTGTCCTTGTTGTGAAGAAACCATAG 471 46.07 MEKRVMVAIDESEYSYYALIWVLENLKESIASSPLFLFTALPPPSTTYTSGLARSYFPLPSNTEFVHTIQENDKKLRCGLLEKAKDICAGRGVAAISITEDGDPGTTICDTVEKLNISLLVLGDRGLGRIKRALIGSVSNYCVQNAKCPVLVVKKP 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1623290 1627069 + MELO3C012258.2.1 Cme10g00247 339133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00247 156 Gene3D HUPs 1 156 IPR014729 -
Cme10g00247 156 Pfam Universal stress protein family 3 154 IPR006016 -
Cme10g00247 156 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 2 156 - -
Cme10g00247 156 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 3 155 - -
Cme10g00247 156 PANTHER UNIVERSAL STRESS PROTEIN A-LIKE PROTEIN 2 156 - -
Cme10g00247 156 CDD USP_Like 4 153 - -
Cme10g00247 156 PRINTS Universal stress protein signature 2 20 IPR006015 -
Cme10g00247 156 PRINTS Universal stress protein signature 114 126 IPR006015 -
Cme10g00247 156 PRINTS Universal stress protein signature 132 154 IPR006015 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00247 - - - csv:101218192 305.064
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01412 Cme-Chr2:20328896 Cme10g00247 Cme-Chr10:1623290 6.38E-12 dispersed
Cme05g01563 Cme-Chr5:24892247 Cme10g00247 Cme-Chr10:1623290 3.17E-20 dispersed
Cme06g00737 Cme-Chr6:4871343 Cme10g00247 Cme-Chr10:1623290 2.88E-13 dispersed
Cme07g02102 Cme-Chr7:25721127 Cme10g00247 Cme-Chr10:1623290 1.35E-15 dispersed
Cme09g00391 Cme-Chr9:3516857 Cme10g00247 Cme-Chr10:1623290 3.18E-17 dispersed
Cme09g01042 Cme-Chr9:14561091 Cme10g00247 Cme-Chr10:1623290 4.20E-11 dispersed
Cme11g00115 Cme-Chr11:1062359 Cme10g00247 Cme-Chr10:1623290 1.04E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g321 . . . . . . . . . . . . . . . Cpe09g00310 . Bhi07g01313 . . . . . . . . . . . . . . Cone19ag0829 . . . . . Cme10g00247 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007321 0 6 0 0 0 1 1 1 1 2 1 1 1 1 1 1 1 5 1 1 1 1 1 1 1 0 1 1 0 3 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00247 Cme_Chr10 FPKM 2.1142 2.167539 3.718824 4.632841 4.527139 4.536158 4.630716 2.850256 2.730825 3.171362