Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00257 ATGAAAATGAGTTGCAATGGGTGTCGGATTCTTCGTAAAGGATGCAGCGATGATTGTATAATTAGACCTTGTCTTCAATGGATTCCCTCCTCCGATTCTCAAGCCAACGCCACCATTTTTCTCGCCAAATTTTACGGCCGCGCCGGCCTCTTCAACCTCATCACCGCCGCCGCCCATCACCTCCGCCCTGCCATTTTCAAGTCATTGTTGTACGAGGCGTGCGGTCGGATGGTGAATCCTGTGTACGGTTCTGTTGGATTGCTGTGCTCCGGCGACTGGGAACGCTGTCAGGCAGCCGTCGACGCCGTCTTGAACGGATCCATGAACGTGGAACCAGATACGCCGCCGTCAAACAACGGTAACTTTTCCCTCAAATGCTGCGACATTCGCCACGTTTGTAACGAACCCAATTTGGCTGCTTCCGGCGATCTTCTCAAGGTCAAGGGTCGGAGCCGGTTCAAGAAGCCCGATCATCGAACCAAATCAAAACCCGGTCCGGATCATGAATTAGGAATTGGGTCTAGTTCTGATGAATCGGGCCGGGATTTGAGAAGTGGAAGCCGGTTTGAGAAG 573 52.53 MKMSCNGCRILRKGCSDDCIIRPCLQWIPSSDSQANATIFLAKFYGRAGLFNLITAAAHHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPDTPPSNNGNFSLKCCDIRHVCNEPNLAASGDLLKVKGRSRFKKPDHRTKSKPGPDHELGIGSSSDESGRDLRSGSRFEK 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1686542 1687834 + MELO3C012250.2.1 Cme10g00257 339143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00257 191 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Cme10g00257 191 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 166 - -
Cme10g00257 191 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Cme10g00257 191 PANTHER LOB DOMAIN-CONTAINING PROTEIN 41-LIKE 1 166 - -
Cme10g00257 191 MobiDBLite consensus disorder prediction 149 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01685 Cme-Chr6:18625694 Cme10g00257 Cme-Chr10:1686542 4.12E-66 dispersed
Cme07g00295 Cme-Chr7:1922289 Cme10g00257 Cme-Chr10:1686542 5.00E-47 dispersed
Cme08g00636 Cme-Chr8:4118183 Cme10g00257 Cme-Chr10:1686542 6.29E-49 dispersed
Cme10g00257 Cme-Chr10:1686542 Cme05g01206 Cme-Chr5:19496762 4.82E-10 dispersed
Cme10g00257 Cme-Chr10:1686542 Cme02g01743 Cme-Chr2:24424860 5.58E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42027 PF03195 LOB 8.30E-23 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00257 - - csv:101212446 384.8