Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00264 ATGTCGTACTCTCCTAATCAGAGATCTGTTAGCGGTAGTAGAAAGTCGAATGTGCTGCCGAATAAATTTTCTGCAGATCCCAGAATGAGGAGAAAACTTCGTATAATCTGTTACGATCCCGATGCAACTGATTCATCCTCGAGCGAAGATGAAGGAGAAACATACGCTAGAAAGTTCAACAGAATCGTTCACGAAATCCACCTACCTCCGCTGAAAAAGTCTCTCCAATCCGAGAGTTCTCAGAACAGCAACAATGAAAACAAAAACCCCAAGTTTAAACAGTCGAAAGCTCTGTTCAAAAACCCTTCATCTCGAAGGCCATCGTCCTCGAAATACAGAGGCGTCAGACAGAGATCTTGGGGTAAATGGGCTGCAGAGATTCGAGATCCCTTTAAAAGAAGCCGTGTTTGGCTTGGTACTTACGATACCGCAGAAGAAGCTTCTCAAGCTTATGAGTCGAGGAGGTTACAGTTTGAAGCTATGGCAGCAGAAATGGCTATTGAAGAAGAAGGAAAAATGAGTGGATCATCATCTACCCCTGTTTTTTCGGAAAGTACGGCGGAAACCACCGTGTCTCATACATCGCCGTCGTCGGTTCTTGAATGGGCTGATTCAACTGTGCAAAGCCACGATTTGAAAGAGGGAACAGAATCGATAAAAGAAGAAACAGACAGTAATATGAACTATCTTCAAGAAGGGGACCCGGGTAATCCGTTTATTGATGAAATTAATATGGGGATTGATTTTGATTCGATTCTGGCTGATGGAATCGGGATGTTCTTGGAAGATTTTGCAAGTTTTGATGACACCCAGATTTTAGGACTTGCTGATGATGAACCCAGTGGTCGTCTTCCAAGTTGGGATTTTGAAGATTTTGGGAATGATGATATTTCTTGTTGGCTTGACGATTCTATCAACATTACATGTTCTTGA 933 42.66 MSYSPNQRSVSGSRKSNVLPNKFSADPRMRRKLRIICYDPDATDSSSSEDEGETYARKFNRIVHEIHLPPLKKSLQSESSQNSNNENKNPKFKQSKALFKNPSSRRPSSSKYRGVRQRSWGKWAAEIRDPFKRSRVWLGTYDTAEEASQAYESRRLQFEAMAAEMAIEEEGKMSGSSSTPVFSESTAETTVSHTSPSSVLEWADSTVQSHDLKEGTESIKEETDSNMNYLQEGDPGNPFIDEINMGIDFDSILADGIGMFLEDFASFDDTQILGLADDEPSGRLPSWDFEDFGNDDISCWLDDSINITCS 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1723758 1725004 - MELO3C012242.2.1 Cme10g00264 339150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00264 310 Gene3D AP2/ERF domain 110 166 IPR036955 GO:0003700|GO:0006355
Cme10g00264 310 MobiDBLite consensus disorder prediction 1 25 - -
Cme10g00264 310 MobiDBLite consensus disorder prediction 1 20 - -
Cme10g00264 310 Pfam AP2 domain 110 160 IPR001471 GO:0003700|GO:0006355
Cme10g00264 310 MobiDBLite consensus disorder prediction 70 115 - -
Cme10g00264 310 MobiDBLite consensus disorder prediction 73 115 - -
Cme10g00264 310 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 23 309 - -
Cme10g00264 310 CDD AP2 111 151 IPR001471 GO:0003700|GO:0006355
Cme10g00264 310 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 309 - -
Cme10g00264 310 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Cme10g00264 310 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Cme10g00264 310 SUPERFAMILY DNA-binding domain 110 158 IPR016177 GO:0003677
Cme10g00264 310 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700|GO:0006355
Cme10g00264 310 SMART rav1_2 111 174 IPR001471 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00264 - - - csv:101221197 535.798
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00404 Cme-Chr6:2583162 Cme10g00264 Cme-Chr10:1723758 4.06E-42 dispersed
Cme10g00264 Cme-Chr10:1723758 Cme11g01676 Cme-Chr11:24770141 3.39E-22 dispersed
Cme10g00264 Cme-Chr10:1723758 Cme12g01880 Cme-Chr12:24981492 1.54E-30 wgd
Cme10g00264 Cme-Chr10:1723758 Cme03g00750 Cme-Chr3:13791227 9.75E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g303 . Blo16g01062 Bda01g02077 Bda11g01147 Bpe13g01346 Bpe10g00938 . Bma15g00086 Cmo04g01583 Cmo18g01035 . Cma18g01025 Car04g01564 Car18g00945 Sed11g1612 . . Bhi07g01328 Tan04g0862 Cmetu03g2262 Lac13g0490 Hepe01g1195 . . Cla05g02303 Cam05g2476 Cec05g2499 Cco05g2541 Clacu05g2471 Cmu05g2333 Cre05g2450 . . Cone13ag0288 . Lsi04g00259 Csa05g02608 Chy10g01143 Cme10g00264 . . . Bda11g01147 . Bpe02g02269 Bma01g00167 Bma06g00759 . . Cmo15g00939 . . . Car15g00843 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001455 2 2 1 3 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 2 3 5 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42029 PF00847 AP2 1.10E-12 CL0081 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00264 Cme_Chr10 FPKM 26.20278 28.090065 52.165359 52.169312 87.997681 68.101784 99.15815 73.924652 76.832016 87.763023