Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00267 ATGGAGAATCAAAATTCCAAGAAGCGGGATCGGGACGACTCGGCCGAGTCAGAAACCGGTTCGCCCGAGGTGAAGCGGCTCAGAGACGACCTTCTAGGTTTCTTCGACGAATCCGATCCTGAACCAGCCACTCAGGATCTCGATTCCTTGATGAGAAGCTTCGAGGAAGAAATCGCTACCGCATCATCGTCTCCGGTGCCGGTGGTTGATTTGACGGCGGATTCCGGTGAGTCTCAACCGGAGTTAGGTTACCTCTTGGAAGCCTCCGACGATGAGCTCGGTCTGCCGCCTTCCAATAGCCAAGAGGAATTTGCTCGAATATCGACTGATTCGTCTGACATCGGTGAGATGTGGAGGTTTGAGGATCAGATCCCGAACTACGACGCTTTCGAACTCGAAGGCGGAGATGTATACAGTGGCAGTGATACGGCGGAGTATGTGGCGTTCGATGGGCTGTTGGAGTATTCGAATCTGTGCTTTGATTCGTCGGATAACTCCGATTTTCTTTGGCGGCAAGAATCTCTGCCGGCGCAGTAG 537 53.07 MENQNSKKRDRDDSAESETGSPEVKRLRDDLLGFFDESDPEPATQDLDSLMRSFEEEIATASSSPVPVVDLTADSGESQPELGYLLEASDDELGLPPSNSQEEFARISTDSSDIGEMWRFEDQIPNYDAFELEGGDVYSGSDTAEYVAFDGLLEYSNLCFDSSDNSDFLWRQESLPAQ 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1750415 1751305 + MELO3C012239.2.1 Cme10g00267 339153

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00267 178 MobiDBLite consensus disorder prediction 1 35 - -
Cme10g00267 178 PANTHER T6J4.11 PROTEIN 2 178 - -
Cme10g00267 178 PANTHER T6J4.11 PROTEIN 2 178 - -
Cme10g00267 178 MobiDBLite consensus disorder prediction 1 45 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00267 - - - csv:101221594 346.665
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00267 Cme-Chr10:1750415 Cme12g01882 Cme-Chr12:25003665 2.90E-14 wgd
Cme10g00267 Cme-Chr10:1750415 Cme02g01748 Cme-Chr2:24458935 2.31E-15 wgd
Cme10g00267 Cme-Chr10:1750415 Cme03g00767 Cme-Chr3:14357166 7.15E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g299 Blo01g00497 Blo16g01059 Bda01g02079 Bda11g01142 Bpe13g01342 . . . Cmo04g01586 Cmo18g01037 . Cma18g01027 Car04g01566 Car18g00947 Sed06g1883 Cpe09g00296 . Bhi07g01332 Tan04g0866 Cmetu10g1799 Lac13g0487 Hepe01g1199 . . Cla05g02306 Cam05g2480 Cec05g2502 Cco05g2544 Clacu05g2475 Cmu05g2336 Cre05g2453 . . . . . Csa05g02605 Chy10g01140 Cme10g00267 Blo06g00964 . . Bda11g01142 . Bpe02g02272 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001339 6 2 4 3 3 2 4 2 2 2 2 2 4 2 2 4 2 4 3 2 2 2 2 2 2 0 2 3 2 1 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00267 Cme_Chr10 FPKM 15.752586 16.062355 9.013899 10.402879 12.777746 11.98701 12.531303 26.90626 26.715685 31.094212