Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00268 ATGAAGATTTTTGTTAAGACTCTCAAGGGCTCTCACTTCGAAATCGAAGTTCAGCCTGCAGATACGGTTGCCGATGTGAAGAAAAACATAGAAACTGTTCAGGGTGCTGATGTTTACCCTGCTGCACAGCAGATGCTTATACATCAAGGGAAAGTCCTTAAAGATAGCTCAACACTGGAGGAAAATAAAGTTGCAGAAAATAGTTTTATTGTAATAATGTTAACAAAGAATAAAAGTTCATCAGGTGGGACATCTTCTACCACACAAGCTGCGCCAGTATCAAAGGCACCACAGAGCACTGCCCCTGCGCCCGCTGCTACTCCAGTGTCAACTACTGAAGTTCCTTTACCAACTTCAGCACCGCCTGCTAGTGTTACTGCTGCTTCTCCTCCCGCTCCCTCTCCTGCCCCTGCTCCTGCTCCTGCTTCTACTCCTGCTCCTGCTCCTGCTTCTACTCCTACTCCTACTCCTACTCCGGCTGCAGCTCCAGCTCCTGCAACTACTGTTTTGCCGGAAACAGATGTCTATAGCCAAGCAGCTTCTAACCTGGTTGCTGGTAGTAACTTGGAGGAGACTATCCAACAGATTCTTGACATGGGTGAAGGGGTTTGGGACAGGGACACTGTTGTTCGGGCGCTTCGTGCGGCTTACAACAATCCAGAAAGGGCTGTTGATTACCTTTATTCTGGAATACCTGAACAAGTTGAAGCCCCACCTGCTCGAGTTCCTTCTACCGTGCAAGCAAGCAACCCTTCTGCTCAACCTGCACAACCAGCCCAACCTGCATCTGTGCCGTCATCAGCTGGCCCAAATGCTAATCCATTAGATCTCTTTCCTCAGGGCTTGCCTAATATAGGTTCCGGAGCTGTTGGTTCCGGCAGTCTTGATTTTCTACGAAATAGTCCTCAGTTCCAAGCTTTGCGAGCAATGGTCCGAGCTAACCCTCAGATACTCCAGCCTATGCTTCAAGAGTTGGGTAAACAAAATCCTCAGCTGATTAGGCTAATTCAAGATCATCAACCTGACTTCCTCCGCTTGATTAATGAGCCCCTCGAAGGAGAAGGGAATATACTTGGGCAGCTTGCTGAGGCCATGCCCCAGGCTATAACCGTAACCCCGGAGGAGCGTGAAGCCATTCAACGGCTTGAGGATATGGGTTTCGACCGAGGTCTAGTTGTGGAGGTTTTCTTTGCATGCAACAAAAATGAGGAAATGGCTGCGAACTACCTTTTAGATCATATCCACGAATTTGAGGGTGATCAGAACTAA 1269 48.38 MKIFVKTLKGSHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSSTLEENKVAENSFIVIMLTKNKSSSGGTSSTTQAAPVSKAPQSTAPAPAATPVSTTEVPLPTSAPPASVTAASPPAPSPAPAPAPASTPAPAPASTPTPTPTPAAAPAPATTVLPETDVYSQAASNLVAGSNLEETIQQILDMGEGVWDRDTVVRALRAAYNNPERAVDYLYSGIPEQVEAPPARVPSTVQASNPSAQPAQPAQPASVPSSAGPNANPLDLFPQGLPNIGSGAVGSGSLDFLRNSPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLINEPLEGEGNILGQLAEAMPQAITVTPEEREAIQRLEDMGFDRGLVVEVFFACNKNEEMAANYLLDHIHEFEGDQN 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1754265 1760573 + MELO3C012238.2.1 Cme10g00268 339154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00268 422 SUPERFAMILY UBA-like 355 417 IPR009060 GO:0005515
Cme10g00268 422 SUPERFAMILY UBA-like 173 233 IPR009060 GO:0005515
Cme10g00268 422 PANTHER UV EXCISION REPAIR PROTEIN RAD23 124 418 - -
Cme10g00268 422 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 132 - -
Cme10g00268 422 PRINTS DNA repair protein Rad23 signature 321 343 IPR004806 GO:0006289
Cme10g00268 422 PRINTS DNA repair protein Rad23 signature 369 385 IPR004806 GO:0006289
Cme10g00268 422 PRINTS DNA repair protein Rad23 signature 386 400 IPR004806 GO:0006289
Cme10g00268 422 PRINTS DNA repair protein Rad23 signature 401 416 IPR004806 GO:0006289
Cme10g00268 422 MobiDBLite consensus disorder prediction 243 270 - -
Cme10g00268 422 SMART uba_6 375 412 IPR015940 -
Cme10g00268 422 SMART uba_6 189 229 IPR015940 -
Cme10g00268 422 MobiDBLite consensus disorder prediction 78 165 - -
Cme10g00268 422 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 187 230 IPR015940 -
Cme10g00268 422 SMART CBM 293 336 IPR006636 -
Cme10g00268 422 PANTHER EXCISION REPAIR PROTEIN RAD23, PUTATIVE-RELATED 1 132 - -
Cme10g00268 422 PANTHER EXCISION REPAIR PROTEIN RAD23, PUTATIVE-RELATED 124 418 - -
Cme10g00268 422 MobiDBLite consensus disorder prediction 238 280 - -
Cme10g00268 422 Gene3D - 286 350 IPR036353 GO:0003684|GO:0006289|GO:0043161
Cme10g00268 422 MobiDBLite consensus disorder prediction 124 164 - -
Cme10g00268 422 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Cme10g00268 422 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Cme10g00268 422 CDD UBA1_Rad23_plant 183 232 - -
Cme10g00268 422 Pfam XPC-binding domain 295 350 IPR015360 GO:0003684|GO:0006289|GO:0043161
Cme10g00268 422 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 372 413 IPR015940 -
Cme10g00268 422 MobiDBLite consensus disorder prediction 78 123 - -
Cme10g00268 422 Gene3D - 182 232 - -
Cme10g00268 422 SUPERFAMILY XPC-binding domain 291 356 IPR036353 GO:0003684|GO:0006289|GO:0043161
Cme10g00268 422 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Cme10g00268 422 Gene3D - 367 414 - -
Cme10g00268 422 Gene3D - 1 80 - -
Cme10g00268 422 Pfam UBA/TS-N domain 375 410 IPR015940 -
Cme10g00268 422 Pfam UBA/TS-N domain 189 227 IPR015940 -
Cme10g00268 422 CDD Ubl_Rad23 1 74 - -
Cme10g00268 422 SMART ubq_7 1 75 IPR000626 GO:0005515
Cme10g00268 422 TIGRFAM rad23: UV excision repair protein Rad23 1 418 IPR004806 GO:0006289
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00268 K10839 RAD23, HR23; UV excision repair protein RAD23 - csv:101220491 647.121
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01940 Cme-Chr4:27069753 Cme10g00268 Cme-Chr10:1754265 2.37E-142 dispersed
Cme10g00268 Cme-Chr10:1754265 Cme11g01623 Cme-Chr11:24006351 2.36E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g298 . . . . . Bpe10g00939 Bma14g01707 Bma15g00085 . Cmo18g01038 . Cma18g01028 . Car18g00948 Sed06g1882 Cpe09g00295 . Bhi07g01334 Tan04g0868 Cmetu10g1073 Lac13g0486 Hepe01g1200 . . Cla05g02307 . Cec05g2503 Cco05g2545 . . Cre05g2454 Cone13ag0836 Cone19ag0843 . . Lsi04g00262 Csa05g02604 Chy10g01139 Cme10g00268 . Blo11g00839 Bda07g01534 . Bpe11g01698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004990 1 1 1 2 2 0 2 1 1 1 1 0 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00268 Cme_Chr10 FPKM 0.135261 0.222813 0.010033 0.006182 0.063512 0.027408 0.025609 0.003227 0.011214 0.002887