Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00272 ATGGCCAACGATACTGCTCACCGGAAGCACCGCCGATCTGCTTCCGATGAGGACGATGATAAATCTTCCAAGCGTCACAAACACCACCACCATCGCCGCCACCACCGTCATCGTCACAGCAGCAATAAGAACGAAGAAGAAAGCTGCCGTGACCGGGAGGATAGTGTTCCTCCCGCTGCTAATCGCAGATCTCGCCCTGAAGATGACGTCGAGGAAGGTGAAATTCTGGAAGAGGACGAGTCTGGTGTTCGCGAGAACGAGGGCGCGACGAAGGATGTGAATGTGGAATTTGGGAAACTTGAAGCTGATGATATTTCTGATCGAATTGACCAGCCCCCTATGGAGTGTCTTTCGGTGGATGCATCATCTAATAACGAGGCTAATTTTACTGTGAAGGAGGGGGCAGGAAACAGTGCTCAAGATCAGAAGACCTCGAAAGTGGACAGTAAGTTCTATAATTTAGATAAGGACAAAGGTGGCTACTATCTAAAAAAAGGCACAAACAAGGAAAGCACAACTCTCTATCAAACTGACTCTGGTTGTAAGCATGGCAATGATGCTAGCTTTTCCATGAGTGAAGTGGCGGGAACTAAATACAATCTTGGACATTGCCGAGAGGGTCATAGCAAAGGGGATTTTGATCATGAATCTCTGGAGTTAGATGAGAAGCTGCACAAACGAATGGCATCTCCTTCTAAAGGGGCTACTAAGAAAATAAGCAACAATGGCAATGGAAAGGTGGCAACAGATGGAAACACCTTGGGGAATGAGAAAAGGCCACAGTTAGAAAGAACTGAAGGCAAGTCCGAGGATTTTACGCCATCAACATCTCACGATCGATTCATCGATGCATCAGATTGTAGGAGTAGATCGAGGTCAAATTGTCATTCTAGGGGACAATCTCAGTCTCGAGAAACAGTAGAAGAGGAGGCAGAGTCAAAGAGTAGACATTATCATGGTTGGGATCACCCAATGTTTGATGATAGAAGTAAAATTCACAATGACTTGGAAGATGATTACACTGAATGTGTTAGGGGAGAGGGAAGGCATCGAAGCAGGGACGCAAAGGACAACGGGAGAAGAAAGATGGAGGTGGATAGGGAATGGTCCAAGGAAAATGAAATGGAAAAAAACAAAGATAAAGATAGGGGGGTAGATAAGCAAAAGTATGATGAGAGAGAGAGAGGTAGGAGTAGGGATAGACGAAAGGAGATGGAACGAAAGAGGAGCAGGGAAAGAGAGTTGGAGAGGGATAGGAGGAGGGAAAAGGATGTGGAAAGAGATAGGAGAGGGAAGGAAAGAGGTTGGAGTAGGGAAAGAGAGGTGCAAAGAGATAGAAGAGTGGAGAGGGAAAGAGGTTGGAGCAGGGAAAGAGAAACAGAAAGGGATAGAAGAACAGAGAAGGAGAGAGGTTGGAGCAAGGAAAGAGAGGTGGACAGGGATAGAAGAGCAGAAAAGGAAAGATGTAGGAGCACTGATAGAGAGGGTAATAGGGATAGAAGAAGAGAAAGGGAAAAAGATAGGAGCAAGGATAAAGAAGTGGATTGGGATGGGAGAAGGGGGGATAGGGACAGGGATCGGAATGATGATAAGGGTGAATATATTGATAGAAATAGAGACAGGGAGAGGGTGAGAGAAGTGCAAAAGGATCGGTTTAGGGATAAAGAATTAGATAGGGAGAGATACGACGATAGAAACAAGAATAAAGCCAGTGACGGTTTAAGTAGTAAAGATAAGTATGGGAATCTTGAACATGGCCACATTAAAGGTTCTAAGCAGTCTAGGCATTACGATAATGAATTTGGTTTGGATGGGGGAAGAATTAATACTGTCGAAAAACATGGTAGTTTTAAGAGAAGCACTCGTGAAGAAGGTGAAGACAAGCCAATGAGTGATCATGATGAGGAGGAAGAGGATGGAGATGGCATGCCATATCAATTAGCTGATGAAGAAGAGGAGGATCTTAACAGGATCAAAGAGGAGAGTAGAAGACGGAGACAAGCAATCCTAGAAAAATATAAATGCCAGCAGTTAGAGAAACAAGTAGAGGCTTCTTTGAAGGAATCCGAGAAAGATAAGGATTCTGGAAAGGATTCTTCTCAATCAGAAGCTGCCGCTCATGCTATTACAGAATTGGTTGATGGGGCAGTGGATGATTGTGTTGCTGACTCATCTTTTGTTGTGGAGAAATCACCACATCAAAATGGAGTAATTGCATCTGATAAAACTGCTGGTACTAAAGGACTTGGAGAGGGTACTCCAAAGGCTGAGGGGTCAGATGGATTATTCTGTGATGACATTTTTGGAGAAACACCTGCTGCAGTTCGTAAAATGGGAAAAAGTGATGGTTTGCAGATAGAGAGGAGTGGTCTTCATGACAATTGGGATGATGCAGATGGATATTATAACTATCGATTTGGTGAAGTGCTTGATGGTCGGTATGAAATTGCTGCTGCTCATGGAAAAGGTGTCTTTTCAACCGTGGTCCGTGCAAAGGATCTCAAAGCTGGTCCTGGCGAACCAGAAGAAGTGGCAATCAAAATTTTGCGTAGTAATGAAACCATGTACAAGGCTGGTCTGGAGGAGTTGGTCATATTGAAAAAGCTAGTAGGTGCAGATCCAGATGACAAGCGTCACTGTGTTCGTTTTCTTTCAAGTTTCAAATATAGGAATCATCTTTGTTTAGTTTTTGAATCTCTTCATATGAATCTCCGTGAGGTCTTGAAGAAATTTGGGCGCAATATTGGCCTTAAGCTAACTGCTGTGAGGGCATACGCTAAGCAGCTTTTTATTGCCCTGAAGCATTTGAGAAATTGTGGTGTTCTCCACTGTGATATAAAGCCAGATAATATGCTGGTTAATGAGGGGAAAAATGTGCTGAAGCTTTGTGATTTTGGTAATGCAATGTTTGCTGGTAAAAATGAAATCACACCGTACCTTGTTAGCCGGTTTTACCGTGCACCTGAAATAATTTTAGGGCTGTCATATGATCATCCAATGGATATCTGGTCGGTGGGTTGCTGTTTGTACGAGCTCTCTACAGGGAAAGTTCTTTTTCCAGGTCCTTCTAATAATGACATGCTGCGCCTACACATGGAATTAAAGGGCCCTTTTCCAAAGAAGATGCTTCGTAAGGGAGCATTTACTGACCAACATTTTGACCAGGACTTGAACTTCCATGCTTCTGAGGAGGATCCTGTAACCAAAAAGACCATAAAGCGAATAATAGTCAATATAAAGCCTAAAGATATTGGGTCAATTATTAGGGGATCTCCTGGTGAAGATCCAAAGATGTTAGCCAATTTTAAGGATCTTCTAGACAAAATTTTTGTATTGGATCCAGAAAAAAGGATGACGGTATCACAAGCATTGAATCATCCATTCATCACTGGCAAGTGA 3399 43.28 MANDTAHRKHRRSASDEDDDKSSKRHKHHHHRRHHRHRHSSNKNEEESCRDREDSVPPAANRRSRPEDDVEEGEILEEDESGVRENEGATKDVNVEFGKLEADDISDRIDQPPMECLSVDASSNNEANFTVKEGAGNSAQDQKTSKVDSKFYNLDKDKGGYYLKKGTNKESTTLYQTDSGCKHGNDASFSMSEVAGTKYNLGHCREGHSKGDFDHESLELDEKLHKRMASPSKGATKKISNNGNGKVATDGNTLGNEKRPQLERTEGKSEDFTPSTSHDRFIDASDCRSRSRSNCHSRGQSQSRETVEEEAESKSRHYHGWDHPMFDDRSKIHNDLEDDYTECVRGEGRHRSRDAKDNGRRKMEVDREWSKENEMEKNKDKDRGVDKQKYDERERGRSRDRRKEMERKRSRERELERDRRREKDVERDRRGKERGWSREREVQRDRRVERERGWSRERETERDRRTEKERGWSKEREVDRDRRAEKERCRSTDREGNRDRRREREKDRSKDKEVDWDGRRGDRDRDRNDDKGEYIDRNRDRERVREVQKDRFRDKELDRERYDDRNKNKASDGLSSKDKYGNLEHGHIKGSKQSRHYDNEFGLDGGRINTVEKHGSFKRSTREEGEDKPMSDHDEEEEDGDGMPYQLADEEEEDLNRIKEESRRRRQAILEKYKCQQLEKQVEASLKESEKDKDSGKDSSQSEAAAHAITELVDGAVDDCVADSSFVVEKSPHQNGVIASDKTAGTKGLGEGTPKAEGSDGLFCDDIFGETPAAVRKMGKSDGLQIERSGLHDNWDDADGYYNYRFGEVLDGRYEIAAAHGKGVFSTVVRAKDLKAGPGEPEEVAIKILRSNETMYKAGLEELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLHMNLREVLKKFGRNIGLKLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEGKNVLKLCDFGNAMFAGKNEITPYLVSRFYRAPEIILGLSYDHPMDIWSVGCCLYELSTGKVLFPGPSNNDMLRLHMELKGPFPKKMLRKGAFTDQHFDQDLNFHASEEDPVTKKTIKRIIVNIKPKDIGSIIRGSPGEDPKMLANFKDLLDKIFVLDPEKRMTVSQALNHPFITGK 1132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1774235 1781537 + MELO3C012233.2.1 Cme10g00272 339158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00272 1132 Coils Coil 645 668 - -
Cme10g00272 1132 MobiDBLite consensus disorder prediction 82 97 - -
Cme10g00272 1132 MobiDBLite consensus disorder prediction 737 756 - -
Cme10g00272 1132 MobiDBLite consensus disorder prediction 1 97 - -
Cme10g00272 1132 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 487 1132 - -
Cme10g00272 1132 Gene3D Phosphorylase Kinase; domain 1 784 873 - -
Cme10g00272 1132 Gene3D Transferase(Phosphotransferase) domain 1 874 1130 - -
Cme10g00272 1132 MobiDBLite consensus disorder prediction 202 660 - -
Cme10g00272 1132 MobiDBLite consensus disorder prediction 257 293 - -
Cme10g00272 1132 ProSitePatterns Serine/Threonine protein kinases active-site signature. 941 953 IPR008271 GO:0004672|GO:0006468
Cme10g00272 1132 ProSiteProfiles Protein kinase domain profile. 814 1129 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00272 1132 MobiDBLite consensus disorder prediction 203 229 - -
Cme10g00272 1132 MobiDBLite consensus disorder prediction 684 704 - -
Cme10g00272 1132 MobiDBLite consensus disorder prediction 302 602 - -
Cme10g00272 1132 CDD STKc_PRP4 813 1129 IPR044092 GO:0004674|GO:0006468|GO:0045292
Cme10g00272 1132 MobiDBLite consensus disorder prediction 234 256 - -
Cme10g00272 1132 SUPERFAMILY Protein kinase-like (PK-like) 801 1131 IPR011009 -
Cme10g00272 1132 MobiDBLite consensus disorder prediction 630 649 - -
Cme10g00272 1132 Pfam Protein kinase domain 819 1129 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00272 1132 MobiDBLite consensus disorder prediction 25 39 - -
Cme10g00272 1132 SMART serkin_6 814 1129 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00272 1132 PANTHER DUAL SPECIFICITY PROTEIN KINASE 487 1132 - -
Cme10g00272 1132 MobiDBLite consensus disorder prediction 611 629 - -
Cme10g00272 1132 MobiDBLite consensus disorder prediction 684 700 - -
Cme10g00272 1132 MobiDBLite consensus disorder prediction 1 24 - -
Cme10g00272 1132 Coils Coil 405 425 - -
Cme10g00272 1132 MobiDBLite consensus disorder prediction 40 70 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00272 K08827 PRPF4B; serine/threonine-protein kinase PRP4 [EC:2.7.11.1] - csv:101220260 1894.78
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme09g01465 Cme10g00272 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00272 Cme-Chr10:1774235 Cme12g01645 Cme-Chr12:23563504 1.09E-39 dispersed
Cme12g02046 Cme-Chr12:25927326 Cme10g00272 Cme-Chr10:1774235 7.68E-09 dispersed
Cme03g01723 Cme-Chr3:25802383 Cme10g00272 Cme-Chr10:1774235 7.54E-33 transposed
Cme10g00272 Cme-Chr10:1774235 Cme09g01465 Cme-Chr9:19849599 5.56E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g291 . . Bda01g01858 . . . Bma14g01704 . . Cmo18g01042 . Cma18g01030 . Car18g00952 Sed14g1516 Cpe09g00291 . Bhi07g01339 Tan04g0874 Cmetu10g1483 Lac13g0482 Hepe01g1204 . . Cla05g02311 Cam05g2484 . . Clacu05g2479 Cmu05g2340 . . . Cone6ag0456 Cone9ag0467 Lsi04g00266 Csa05g02600 Chy10g01135 Cme10g00272 . Blo11g00836 . . Bpe11g01696 . . . . . . . Cma15g01400 . Car15g01262 Cpe13g00051 . . . . . . . . Cla01g00533 Cam01g0553 Cec01g0545 Cco01g0569 Clacu01g0551 Cmu01g0524 Cre09g1986 Lsi09g00576 . Chy09g00937 Cme09g01465
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003313 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 10 7 1 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65190 PF00069 Pkinase 3.10E-46 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00272 Cme_Chr10 FPKM 0.880893 0.0 2.021753 1.492685 5.359317 5.423287 6.261474 0.914803 1.380295 0.894075