Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00288 ATGGATTTCGTCGATAATTTTCTGGATATTCGAGTCGGATTGGATTTGAGTAACTATGCTGATGCTTTGGATCGAGAACGACAAAAAATTCAAGTCTTCCAGCGAGAACTTCCCCTCTGTTTGGAGCTCGTCACTAGAGCTATTGATTCTTGCCGGCAGCAGTTGTCTGGGGTGTCGACAGAGAGCTCCGAACATACATCAAGCGATCGCCCTGTTTTGGAGGAGTTTATTCCTATTAACAAACCTTGTGTGAATTCCCATTTTGAAATTGAAGAAGATGAACAATCAAAACCCGGGAAAATTGAATTGGGTCGATCGGATTGGCTCAAATCGGCTCAGCTTTGGAATCAATCGTCAGATCCTCCGATTACAGAGGATGTTGCTAAGGAAACGACGTCGTCGGTTGTTGAGGTCAAAAAAAATGGCGGTGGCGGTGCTTTTCAACCATTTGAAAAAACAACTCCACTGAAAACAGAGACGGCTGTGGTAGTCGGTAAAACGACCGGTTCTCCTCCAATTCCGGAGGCAACAACGAGTTCGACGGCGGAAACCGCTTCCAAATGTGGCGGAGGAACTACTAAACGAGAAGATAAGGAATCTCAGAGTCAAAGAAAACAGAGGCGGTGCTGGTCGTCAGAGTTACACCGGCGATTCGTTCACGCCCTTCAACAGCTCGGCGGTCCTCACGTTGCTACACCAAAACAAATCAGGGAGTTAATGAAGGTCGATGGACTCACTAACGATGAAGTCAAAAGCCATTTACAGAAGTACCGATTGCACGCAAGGAGACCAACAAATTCAGCAATGCAAGACAGCGGCAGCTCATCGGCGCCGCAGCAATTCGTGGTGGTTGGAAGCATATGGGTTCCACCACCTCCTCCACCGAAATACACGGTGGCAACGACAGCAAAAGGGAGAAATGGGATTTATGCTCCGGTGGCGACGGCGGTAGGACGGCAGACGACGGCAGAGGAAGGGAAGGCGAGCCACAGCGGAGGAATGGTTCATTCAAATTCGCCGGCGACGTCTTCCTGCACCCATACCACTACAAATTCGCCCTCCGCGGTGTAG 1071 49.39 MDFVDNFLDIRVGLDLSNYADALDRERQKIQVFQRELPLCLELVTRAIDSCRQQLSGVSTESSEHTSSDRPVLEEFIPINKPCVNSHFEIEEDEQSKPGKIELGRSDWLKSAQLWNQSSDPPITEDVAKETTSSVVEVKKNGGGGAFQPFEKTTPLKTETAVVVGKTTGSPPIPEATTSSTAETASKCGGGTTKREDKESQSQRKQRRCWSSELHRRFVHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHARRPTNSAMQDSGSSSAPQQFVVVGSIWVPPPPPPKYTVATTAKGRNGIYAPVATAVGRQTTAEEGKASHSGGMVHSNSPATSSCTHTTTNSPSAV 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1872211 1874137 - MELO3C012218.2.1 Cme10g00288 339174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00288 356 MobiDBLite consensus disorder prediction 320 356 - -
Cme10g00288 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 262 IPR017930 -
Cme10g00288 356 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 205 260 IPR006447 GO:0003677
Cme10g00288 356 MobiDBLite consensus disorder prediction 190 209 - -
Cme10g00288 356 Gene3D - 204 261 - -
Cme10g00288 356 PANTHER TRANSCRIPTION FACTOR HHO2 16 350 - -
Cme10g00288 356 MobiDBLite consensus disorder prediction 322 356 - -
Cme10g00288 356 MobiDBLite consensus disorder prediction 165 188 - -
Cme10g00288 356 MobiDBLite consensus disorder prediction 165 209 - -
Cme10g00288 356 Coils Coil 16 36 - -
Cme10g00288 356 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
Cme10g00288 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 16 350 IPR044787 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00288 - - - csv:101203539 587.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01953 Cme-Chr5:28074342 Cme10g00288 Cme-Chr10:1872211 1.29E-58 dispersed
Cme08g00548 Cme-Chr8:3446536 Cme10g00288 Cme-Chr10:1872211 1.96E-36 dispersed
Cme10g00288 Cme-Chr10:1872211 Cme11g00507 Cme-Chr11:5113944 1.41E-46 dispersed
Cme10g00288 Cme-Chr10:1872211 Cme03g00787 Cme-Chr3:14749130 8.22E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g270 Blo01g00489 Blo16g01054 Bda01g02090 . Bpe13g01332 . Bma14g01699 . . Cmo18g01059 . Cma18g01041 . Car18g00967 Sed06g1866 Cpe09g00276 . Bhi07g01367 Tan04g0896 Cmetu10g0277 Lac13g0461 Hepe01g1219 . . Cla05g02327 Cam05g2500 Cec05g2524 Cco05g2566 Clacu05g2494 Cmu05g2357 Cre05g2473 Cone13ag0852 Cone19ag0853 Cone6ag0464 Cone9ag0476 Lsi04g00286 Csa05g02583 Chy10g01118 Cme10g00288 . Blo11g00832 Bda07g01528 . . Bpe02g02281 . Bma06g00768 . . . . . . Car15g00854 Cpe13g00409 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme11g01645 CCT 22 220 G2-like Transcription Factor Family AT3G24120 54.4 1.1e-43 174.1
Cme01g01493 CCT 16 176 G2-like Transcription Factor Family AT3G24120 59.8 5.9e-42 168.3
Cme04g01468 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Cme08g01009 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Cme06g01406 . 298 500 G2-like Transcription Factor Family AT5G16560 54.5 1.6e-45 180.6
Cme04g00145 . 298 503 G2-like Transcription Factor Family AT5G16560 50.9 6.4e-39 158.7
Cme04g00674 CCT 1 159 G2-like Transcription Factor Family AT5G42630 59.0 4.3e-37 151.8
Cme02g01289 CCT 4 340 G2-like Transcription Factor Family AT2G03500 51.4 6.1e-80 295.0
Cme03g00787 . 20 258 G2-like Transcription Factor Family AT1G25550 55.2 1.3e-51 200.3
Cme10g00288 . 19 255 G2-like Transcription Factor Family AT1G25550 53.4 2.6e-47 186.0
Cme08g01427 . 1 301 G2-like Transcription Factor Family AT5G05090 55.7 2.5e-76 282.3
Cme04g02132 . 1 286 G2-like Transcription Factor Family AT5G05090 55.9 4.9e-72 268.1
Cme11g01645 CCT 22 220 G2-like Transcription Factor Family AT3G24120 54.4 1.1e-43 174.1
Cme01g01493 CCT 16 176 G2-like Transcription Factor Family AT3G24120 59.8 5.9e-42 168.3
Cme04g01468 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Cme08g01009 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Cme01g01493 CCT 1 379 G2-like Transcription Factor Family AT1G79430 53.1 4.0e-85 312.0
Cme11g01645 CCT 1 223 G2-like Transcription Factor Family AT1G79430 72.3 4.9e-75 278.5
Cme04g01787 . 72 273 G2-like Transcription Factor Family AT5G18240 52.7 1.2e-40 164.1
Cme08g01008 . 54 270 G2-like Transcription Factor Family AT2G01060 65.2 1.2e-53 206.8
Cme08g01427 . 1 301 G2-like Transcription Factor Family AT3G10760 63.5 6.4e-93 337.8
Cme04g02132 . 1 286 G2-like Transcription Factor Family AT3G10760 59.2 4.6e-83 305.1
Cme08g01427 . 1 203 G2-like Transcription Factor Family AT2G40970 62.1 2.3e-63 239.2
Cme04g02132 . 1 199 G2-like Transcription Factor Family AT2G40970 63.3 1.1e-57 220.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013799 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42030 None None None None Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00288 Cme_Chr10 FPKM 1.346879 1.589964 2.255271 2.779945 0.402405 0.224629 0.575427 0.0 0.0 0.0