Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00288 ATGGATTTCGTCGATAATTTTCTGGATATTCGAGTCGGATTGGATTTGAGTAACTATGCTGATGCTTTGGATCGAGAACGACAAAAAATTCAAGTCTTCCAGCGAGAACTTCCCCTCTGTTTGGAGCTCGTCACTAGAGCTATTGATTCTTGCCGGCAGCAGTTGTCTGGGGTGTCGACAGAGAGCTCCGAACATACATCAAGCGATCGCCCTGTTTTGGAGGAGTTTATTCCTATTAACAAACCTTGTGTGAATTCCCATTTTGAAATTGAAGAAGATGAACAATCAAAACCCGGGAAAATTGAATTGGGTCGATCGGATTGGCTCAAATCGGCTCAGCTTTGGAATCAATCGTCAGATCCTCCGATTACAGAGGATGTTGCTAAGGAAACGACGTCGTCGGTTGTTGAGGTCAAAAAAAATGGCGGTGGCGGTGCTTTTCAACCATTTGAAAAAACAACTCCACTGAAAACAGAGACGGCTGTGGTAGTCGGTAAAACGACCGGTTCTCCTCCAATTCCGGAGGCAACAACGAGTTCGACGGCGGAAACCGCTTCCAAATGTGGCGGAGGAACTACTAAACGAGAAGATAAGGAATCTCAGAGTCAAAGAAAACAGAGGCGGTGCTGGTCGTCAGAGTTACACCGGCGATTCGTTCACGCCCTTCAACAGCTCGGCGGTCCTCACGTTGCTACACCAAAACAAATCAGGGAGTTAATGAAGGTCGATGGACTCACTAACGATGAAGTCAAAAGCCATTTACAGAAGTACCGATTGCACGCAAGGAGACCAACAAATTCAGCAATGCAAGACAGCGGCAGCTCATCGGCGCCGCAGCAATTCGTGGTGGTTGGAAGCATATGGGTTCCACCACCTCCTCCACCGAAATACACGGTGGCAACGACAGCAAAAGGGAGAAATGGGATTTATGCTCCGGTGGCGACGGCGGTAGGACGGCAGACGACGGCAGAGGAAGGGAAGGCGAGCCACAGCGGAGGAATGGTTCATTCAAATTCGCCGGCGACGTCTTCCTGCACCCATACCACTACAAATTCGCCCTCCGCGGTGTAG 1071 49.39 MDFVDNFLDIRVGLDLSNYADALDRERQKIQVFQRELPLCLELVTRAIDSCRQQLSGVSTESSEHTSSDRPVLEEFIPINKPCVNSHFEIEEDEQSKPGKIELGRSDWLKSAQLWNQSSDPPITEDVAKETTSSVVEVKKNGGGGAFQPFEKTTPLKTETAVVVGKTTGSPPIPEATTSSTAETASKCGGGTTKREDKESQSQRKQRRCWSSELHRRFVHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHARRPTNSAMQDSGSSSAPQQFVVVGSIWVPPPPPPKYTVATTAKGRNGIYAPVATAVGRQTTAEEGKASHSGGMVHSNSPATSSCTHTTTNSPSAV 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1872211 1874137 - MELO3C012218.2.1 Cme10g00288 339174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00288 356 MobiDBLite consensus disorder prediction 320 356 - -
Cme10g00288 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 262 IPR017930 -
Cme10g00288 356 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 205 260 IPR006447 GO:0003677
Cme10g00288 356 MobiDBLite consensus disorder prediction 190 209 - -
Cme10g00288 356 Gene3D - 204 261 - -
Cme10g00288 356 PANTHER TRANSCRIPTION FACTOR HHO2 16 350 - -
Cme10g00288 356 MobiDBLite consensus disorder prediction 322 356 - -
Cme10g00288 356 MobiDBLite consensus disorder prediction 165 188 - -
Cme10g00288 356 MobiDBLite consensus disorder prediction 165 209 - -
Cme10g00288 356 Coils Coil 16 36 - -
Cme10g00288 356 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
Cme10g00288 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 16 350 IPR044787 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01953 Cme-Chr5:28074342 Cme10g00288 Cme-Chr10:1872211 1.29E-58 dispersed
Cme08g00548 Cme-Chr8:3446536 Cme10g00288 Cme-Chr10:1872211 1.96E-36 dispersed
Cme10g00288 Cme-Chr10:1872211 Cme11g00507 Cme-Chr11:5113944 1.41E-46 dispersed
Cme10g00288 Cme-Chr10:1872211 Cme03g00787 Cme-Chr3:14749130 8.22E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42030 None None None None Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00288 - - csv:101203539 587.03