Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00289 ATGGACGGGATTTGCATTGACGAAACAACTTCCACCGAATCTAAATCTCCACCGCCGGACAACAGTCTCTGCCGCGTCGGAAGTGGCGTCACCAGTGTGGTTCTGGATTCCGACTCCAGCGGCGGGGGAGTTGAAGCGGAGTCAAGGAAATTACCATCTTCCCGTTACAAAGGAGTGGTCCCACAGCCCAACGGCCGATGGGGGGCTCAGATTTACGAGAAGCATCAAAGAGTATGGCTGGGTACTTTCAACGAAGAGGATGAAGCAGCACGTGCTTACGACGTGGCTGCTCAACGTTTCCGTGGCCGTGACGCCGTTACTAATTTCAAGCCGTTAACACACGGCGGTGGTGAAGAAGACGACATCGTATCCGCTTTCCTCAACTCCCATTCCAAGGCGGAGATCGTCGACATGTTACGTAAGCATACTTATTTAGATGAACTCCACCAAAGCAAACGAAACGCTGGGTTATCCGGTTCCGATCGTAAACGAAACCGTTTGTTATCCGGTTCCGATGATGAACCGGAAACCGCTCGGGAACTTTTGTTTGAAAAAGCCGTAACTCCAAGCGACGTGGGGAAATTAAACCGTTTGGTCATACCAAAACAACACGCGGAAAAGAATTTCCCTCTCCAAACCGGTTCGACCGCTTCCTCGAAAGGTCTGTTGTTGAACTTTGAAGATGGAGGAGGGAAAGTCTGGCGGTTCAGGTACTCGTATTGGAATAGTAGCCAAAGCTATGTGTTGACGAAAGGATGGAGCCGGTTCGTGAAAGAAAAGAATTTGAAAGCCGGTGACATTGTTAGCTTCTTGAAATCGACCGGACAAGACAAACAGCTTTACATTGAATGGAAGGCACGAAAGGCTTCTACTACAACCGGGTCCGCTATCAACCCGGTTCAGACCTTTAGACTGTTTGGAGTTGACATTATCAAAGCTTCGCCGAATAGTGGGTGTAGTGAGAAGAGAAGGAGAGAGTTGGAATTTCTCACTTTACAATGTACCAAAAAACAAAGGATTGTCGGAGCATTGTAA 1035 48.6 MDGICIDETTSTESKSPPPDNSLCRVGSGVTSVVLDSDSSGGGVEAESRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLTHGGGEEDDIVSAFLNSHSKAEIVDMLRKHTYLDELHQSKRNAGLSGSDRKRNRLLSGSDDEPETARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGQDKQLYIEWKARKASTTTGSAINPVQTFRLFGVDIIKASPNSGCSEKRRRELEFLTLQCTKKQRIVGAL 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1878784 1879958 - MELO3C012217.2.1 Cme10g00289 339175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00289 344 Pfam B3 DNA binding domain 183 284 IPR003340 GO:0003677
Cme10g00289 344 SUPERFAMILY DNA-binding pseudobarrel domain 181 275 IPR015300 -
Cme10g00289 344 Gene3D AP2/ERF domain 54 111 IPR036955 GO:0003700|GO:0006355
Cme10g00289 344 SMART rav1_2 55 116 IPR001471 GO:0003700|GO:0006355
Cme10g00289 344 SUPERFAMILY DNA-binding domain 54 110 IPR016177 GO:0003677
Cme10g00289 344 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 14 344 IPR044800 GO:0003700
Cme10g00289 344 MobiDBLite consensus disorder prediction 156 173 - -
Cme10g00289 344 MobiDBLite consensus disorder prediction 1 24 - -
Cme10g00289 344 CDD B3_DNA 182 270 IPR003340 GO:0003677
Cme10g00289 344 ProSiteProfiles AP2/ERF domain profile. 55 110 IPR001471 GO:0003700|GO:0006355
Cme10g00289 344 PANTHER PROTEIN RAV1, PUTATIVE-RELATED 14 344 - -
Cme10g00289 344 Pfam AP2 domain 54 102 IPR001471 GO:0003700|GO:0006355
Cme10g00289 344 Gene3D - 170 297 IPR015300 -
Cme10g00289 344 SMART B3_2 183 288 IPR003340 GO:0003677
Cme10g00289 344 MobiDBLite consensus disorder prediction 154 173 - -
Cme10g00289 344 CDD AP2 54 109 IPR001471 GO:0003700|GO:0006355
Cme10g00289 344 ProSiteProfiles B3 DNA-binding domain profile. 183 288 IPR003340 GO:0003677
Cme10g00289 344 MobiDBLite consensus disorder prediction 7 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00289 K09287 RAV; RAV-like factor - csv:101203784 665.225
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01073 Cme-Chr2:15752452 Cme10g00289 Cme-Chr10:1878784 5.02E-56 dispersed
Cme09g00779 Cme-Chr9:9587760 Cme10g00289 Cme-Chr10:1878784 4.76E-135 dispersed
Cme10g00289 Cme-Chr10:1878784 Cme11g02307 Cme-Chr11:30130044 8.48E-47 dispersed
Cme10g00289 Cme-Chr10:1878784 Cme09g01901 Cme-Chr9:23146679 1.23E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g266 . . Bda01g02092 . . Bpe10g00947 Bma14g01697 Bma15g00077 . Cmo18g01060 . Cma18g01042 . Car18g00968 Sed06g1865 Cpe09g00275 Cpe01g01766 Bhi07g01368 Tan04g0897 Cmetu10g0653 Lac13g0460 Hepe01g1220 . . Cla05g02328 Cam05g2502 Cec05g2525 Cco05g2568 Clacu05g2496 Cmu05g2358 Cre05g2474 Cone13ag0853 Cone19ag0854 Cone6ag0468 Cone9ag0480 Lsi04g00288 Csa05g02582 Chy10g01117 Cme10g00289 Blo06g00971 Blo11g00830 Bda07g01526 . Bpe11g01690 Bpe02g02282 Bma01g00157 . . . Cmo15g01051 Cma04g02012 Cma15g00991 . . . . . . . . . . . . . . . . . . . . Chy09g00618 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g00482 . 74 276 B3 DNA Binding Superfamily AT3G26790 55.2 2.2e-63 239.6
Cme08g00291 . 105 274 B3 DNA Binding Superfamily AT1G28300 51.8 8.3e-38 154.8
Cme10g00289 . 16 344 B3 DNA Binding Superfamily AT1G25560 62.8 3.4e-108 388.7
Cme09g00779 . 34 307 B3 DNA Binding Superfamily AT1G25560 62.3 5.4e-90 328.2
Cme04g02367 . 41 159 B3 DNA Binding Superfamily AT1G25560 65.5 9.7e-39 157.9
Cme09g01901 . 53 161 B3 DNA Binding Superfamily AT1G25560 66.1 5.3e-37 152.1
Cme11g02307 . 96 211 B3 DNA Binding Superfamily AT1G25560 62.1 7.0e-37 151.8
Cme09g01901 . 52 166 B3 DNA Binding Superfamily AT1G01030 84.5 1.3e-53 207.2
Cme07g01632 . 62 171 B3 DNA Binding Superfamily AT1G01030 79.5 2.1e-48 189.9
Cme10g00289 . 179 287 B3 DNA Binding Superfamily AT1G01030 67.0 1.0e-37 154.5
Cme08g02302 . 14 696 B3 DNA Binding Superfamily AT4G30080 58.5 4.1e-216 748.0
Cme11g01803 . 4 688 B3 DNA Binding Superfamily AT4G30080 57.3 3.0e-211 731.9
Cme03g01275 . 8 689 B3 DNA Binding Superfamily AT4G30080 54.8 1.0e-198 690.3
Cme11g00493 . 16 380 B3 DNA Binding Superfamily AT3G18990 57.8 2.0e-103 372.9
Cme10g01685 . 5 673 B3 DNA Binding Superfamily AT1G59750 68.5 3.4e-247 851.3
Cme07g01536 . 19 667 B3 DNA Binding Superfamily AT1G59750 50.2 8.5e-158 554.3
Cme01g00630 . 1 341 B3 DNA Binding Superfamily AT1G59750 63.3 3.5e-119 426.0
Cme08g00111 CCT 23 383 B3 DNA Binding Superfamily AT1G59750 55.6 1.1e-107 387.9
Cme12g01152 CCT 23 396 B3 DNA Binding Superfamily AT1G59750 53.4 2.2e-105 380.2
Cme05g01243 . 20 412 B3 DNA Binding Superfamily AT1G59750 50.3 4.1e-104 375.9
Cme05g02083 CCT 23 358 B3 DNA Binding Superfamily AT1G59750 54.4 1.0e-102 371.3
Cme04g00486 . 1 281 B3 DNA Binding Superfamily AT1G59750 51.4 6.0e-79 292.4
Cme11g01803 . 3 688 B3 DNA Binding Superfamily AT2G28350 58.2 1.5e-210 729.6
Cme08g02302 . 13 696 B3 DNA Binding Superfamily AT2G28350 54.9 3.2e-197 685.3
Cme03g01275 . 13 686 B3 DNA Binding Superfamily AT2G28350 50.6 1.0e-171 600.5
Cme07g01536 . 19 670 B3 DNA Binding Superfamily AT2G46530 54.4 3.1e-178 622.1
Cme09g01853 . 18 671 B3 DNA Binding Superfamily AT2G46530 52.7 1.9e-175 612.8
Cme10g01685 . 13 663 B3 DNA Binding Superfamily AT2G46530 51.4 6.8e-165 577.8
Cme01g00630 . 1 326 B3 DNA Binding Superfamily AT2G46530 73.7 1.2e-132 470.7
Cme08g00111 CCT 1 368 B3 DNA Binding Superfamily AT2G46530 51.6 7.1e-98 355.1
Cme12g01152 CCT 1 368 B3 DNA Binding Superfamily AT2G46530 50.1 7.4e-95 345.1
Cme04g00486 . 1 281 B3 DNA Binding Superfamily AT2G46530 50.5 1.1e-74 278.1
Cme01g00630 . 2 320 B3 DNA Binding Superfamily AT1G34310 51.4 2.1e-91 333.6
Cme01g00630 . 2 320 B3 DNA Binding Superfamily AT1G35540 51.7 2.1e-94 343.6
Cme01g00630 . 2 320 B3 DNA Binding Superfamily AT1G35520 51.8 2.8e-91 333.2
Cme08g02302 . 14 696 B3 DNA Binding Superfamily AT4G30080 58.5 4.1e-216 748.0
Cme11g01803 . 4 688 B3 DNA Binding Superfamily AT4G30080 57.3 3.0e-211 731.9
Cme03g01275 . 8 689 B3 DNA Binding Superfamily AT4G30080 54.8 1.0e-198 690.3
Cme07g01536 . 55 670 B3 DNA Binding Superfamily AT3G61830 51.4 2.2e-159 559.3
Cme09g01853 . 54 678 B3 DNA Binding Superfamily AT3G61830 51.3 2.3e-156 549.3
Cme10g01685 . 53 644 B3 DNA Binding Superfamily AT3G61830 51.2 5.3e-153 538.1
Cme01g00630 . 1 324 B3 DNA Binding Superfamily AT3G61830 72.1 2.2e-135 479.6
Cme08g00111 CCT 51 364 B3 DNA Binding Superfamily AT3G61830 53.2 7.2e-86 315.1
Cme12g01152 CCT 51 364 B3 DNA Binding Superfamily AT3G61830 51.4 4.4e-83 305.8
Cme04g00486 . 1 281 B3 DNA Binding Superfamily AT3G61830 51.1 2.0e-75 280.4
Cme05g02083 CCT 1 1110 B3 DNA Binding Superfamily AT1G19220 62.5 0.0e+00 1177.2
Cme08g00111 CCT 1 468 B3 DNA Binding Superfamily AT1G19220 59.2 2.1e-153 540.4
Cme02g02113 . 41 396 B3 DNA Binding Superfamily AT1G19220 52.8 6.2e-105 379.4
Cme10g01685 . 26 387 B3 DNA Binding Superfamily AT1G19220 50.7 2.8e-97 354.0
Cme08g00264 . 46 379 B3 DNA Binding Superfamily AT1G19220 50.1 1.5e-90 331.6
Cme01g00630 . 2 310 B3 DNA Binding Superfamily AT1G35240 53.5 5.6e-92 335.5
Cme01g00630 . 2 320 B3 DNA Binding Superfamily AT1G34410 52.0 6.1e-94 342.0
Cme01g00630 . 2 320 B3 DNA Binding Superfamily AT1G34390 53.7 5.4e-95 345.5
Cme07g01536 . 25 229 B3 DNA Binding Superfamily AT1G43950 55.8 6.8e-59 224.2
Cme09g01853 . 24 228 B3 DNA Binding Superfamily AT1G43950 55.8 5.8e-58 221.1
Cme10g01685 . 19 227 B3 DNA Binding Superfamily AT1G43950 51.2 3.7e-57 218.4
Cme02g02113 . 41 246 B3 DNA Binding Superfamily AT1G43950 52.9 6.4e-57 217.6
Cme01g00630 . 2 160 B3 DNA Binding Superfamily AT1G43950 54.7 1.4e-40 163.3
Cme08g00264 . 149 434 B3 DNA Binding Superfamily AT2G33860 66.2 1.1e-108 390.6
Cme11g01785 . 168 451 B3 DNA Binding Superfamily AT2G33860 57.7 1.4e-90 330.5
Cme02g02113 . 147 436 B3 DNA Binding Superfamily AT2G33860 51.0 1.1e-76 284.3
Cme08g00111 CCT 127 358 B3 DNA Binding Superfamily AT2G33860 56.9 7.0e-71 265.0
Cme12g01152 CCT 127 358 B3 DNA Binding Superfamily AT2G33860 56.9 1.2e-70 264.2
Cme05g02083 CCT 126 356 B3 DNA Binding Superfamily AT2G33860 54.5 5.0e-69 258.8
Cme07g01536 . 130 357 B3 DNA Binding Superfamily AT2G33860 52.4 1.9e-68 256.9
Cme04g00486 . 51 309 B3 DNA Binding Superfamily AT2G33860 53.5 4.3e-68 255.8
Cme05g01243 . 145 376 B3 DNA Binding Superfamily AT2G33860 54.3 9.5e-68 254.6
Cme01g00630 . 61 288 B3 DNA Binding Superfamily AT2G33860 52.4 2.0e-65 246.9
Cme09g01853 . 129 356 B3 DNA Binding Superfamily AT2G33860 51.1 1.7e-64 243.8
Cme11g01785 . 48 802 B3 DNA Binding Superfamily AT5G60450 60.3 2.2e-250 862.1
Cme08g00111 CCT 7 377 B3 DNA Binding Superfamily AT5G60450 50.9 6.9e-103 372.1
Cme12g01152 CCT 7 377 B3 DNA Binding Superfamily AT5G60450 50.7 9.0e-103 371.7
Cme05g02083 CCT 14 374 B3 DNA Binding Superfamily AT5G60450 50.1 1.4e-98 357.8
Cme04g00486 . 1 286 B3 DNA Binding Superfamily AT5G60450 51.5 1.2e-78 291.6
Cme04g00486 . 1 841 B3 DNA Binding Superfamily AT1G19850 60.1 3.5e-255 878.2
Cme08g00111 CCT 19 367 B3 DNA Binding Superfamily AT1G19850 65.6 2.9e-137 486.5
Cme10g01685 . 16 357 B3 DNA Binding Superfamily AT1G19850 52.2 3.5e-98 356.7
Cme12g01152 CCT 1 898 B3 DNA Binding Superfamily AT1G30330 70.5 0.0e+00 1171.4
Cme08g00111 CCT 1 718 B3 DNA Binding Superfamily AT1G30330 71.3 4.3e-272 934.5
Cme10g01685 . 23 383 B3 DNA Binding Superfamily AT1G30330 54.0 5.0e-103 372.9
Cme07g01536 . 25 379 B3 DNA Binding Superfamily AT1G30330 52.1 1.6e-101 367.9
Cme09g01853 . 24 397 B3 DNA Binding Superfamily AT1G30330 50.1 1.1e-97 355.1
Cme01g00630 . 1 288 B3 DNA Binding Superfamily AT1G30330 53.5 2.8e-82 303.9
Cme05g02083 CCT 1 1094 B3 DNA Binding Superfamily AT5G20730 58.1 0.0e+00 1076.6
Cme08g00111 CCT 4 468 B3 DNA Binding Superfamily AT5G20730 59.5 4.6e-151 532.7
Cme12g01152 CCT 4 469 B3 DNA Binding Superfamily AT5G20730 59.1 4.6e-151 532.7
Cme02g02113 . 41 393 B3 DNA Binding Superfamily AT5G20730 52.8 9.4e-104 375.6
Cme10g01685 . 6 360 B3 DNA Binding Superfamily AT5G20730 51.0 4.7e-95 346.7
Cme12g01152 CCT 97 861 B3 DNA Binding Superfamily AT5G37020 53.2 4.2e-187 651.7
Cme08g00111 CCT 97 464 B3 DNA Binding Superfamily AT5G37020 77.3 4.0e-161 565.5
Cme05g02083 CCT 96 362 B3 DNA Binding Superfamily AT5G37020 71.1 1.0e-108 391.3
Cme05g01243 . 115 472 B3 DNA Binding Superfamily AT5G37020 58.6 1.9e-107 387.1
Cme01g00630 . 54 288 B3 DNA Binding Superfamily AT5G37020 55.2 1.7e-71 267.7
Cme09g01853 . 20 672 B3 DNA Binding Superfamily AT4G23980 57.7 6.2e-198 687.6
Cme07g01536 . 1 667 B3 DNA Binding Superfamily AT4G23980 56.4 3.2e-194 675.2
Cme10g01685 . 16 644 B3 DNA Binding Superfamily AT4G23980 52.8 1.0e-168 590.5
Cme01g00630 . 2 456 B3 DNA Binding Superfamily AT4G23980 57.4 8.8e-136 481.1
Cme04g00486 . 1 281 B3 DNA Binding Superfamily AT4G23980 53.3 2.5e-82 303.5
Cme02g02113 . 36 828 B3 DNA Binding Superfamily AT5G62000 62.4 4.5e-284 974.2
Cme01g00630 . 1 288 B3 DNA Binding Superfamily AT5G62000 69.5 8.0e-116 415.2
Cme08g00111 CCT 20 376 B3 DNA Binding Superfamily AT5G62000 56.1 1.1e-109 394.8
Cme05g02083 CCT 23 380 B3 DNA Binding Superfamily AT5G62000 54.0 1.3e-105 381.3
Cme08g00291 . 105 274 B3 DNA Binding Superfamily AT1G28300 51.8 8.3e-38 154.8
Cme03g00482 . 74 276 B3 DNA Binding Superfamily AT3G26790 55.2 2.2e-63 239.6
Cme05g02083 CCT 1 1110 B3 DNA Binding Superfamily AT1G19220 62.5 0.0e+00 1177.2
Cme08g00111 CCT 1 468 B3 DNA Binding Superfamily AT1G19220 59.2 2.1e-153 540.4
Cme02g02113 . 41 396 B3 DNA Binding Superfamily AT1G19220 52.8 6.2e-105 379.4
Cme10g01685 . 26 387 B3 DNA Binding Superfamily AT1G19220 50.7 2.8e-97 354.0
Cme08g00264 . 46 379 B3 DNA Binding Superfamily AT1G19220 50.1 1.5e-90 331.6
Cme04g00486 . 1 841 B3 DNA Binding Superfamily AT1G19850 60.1 3.5e-255 878.2
Cme08g00111 CCT 19 367 B3 DNA Binding Superfamily AT1G19850 65.6 2.9e-137 486.5
Cme10g01685 . 16 357 B3 DNA Binding Superfamily AT1G19850 52.2 3.5e-98 356.7
Cme12g01152 CCT 1 898 B3 DNA Binding Superfamily AT1G30330 70.5 0.0e+00 1171.4
Cme08g00111 CCT 1 718 B3 DNA Binding Superfamily AT1G30330 71.3 4.3e-272 934.5
Cme10g01685 . 23 383 B3 DNA Binding Superfamily AT1G30330 54.0 5.0e-103 372.9
Cme07g01536 . 25 379 B3 DNA Binding Superfamily AT1G30330 52.1 1.6e-101 367.9
Cme09g01853 . 24 397 B3 DNA Binding Superfamily AT1G30330 50.1 1.1e-97 355.1
Cme01g00630 . 1 288 B3 DNA Binding Superfamily AT1G30330 53.5 2.8e-82 303.9
Cme05g02083 CCT 1 1094 B3 DNA Binding Superfamily AT5G20730 58.1 0.0e+00 1076.6
Cme08g00111 CCT 4 468 B3 DNA Binding Superfamily AT5G20730 59.5 4.6e-151 532.7
Cme12g01152 CCT 4 469 B3 DNA Binding Superfamily AT5G20730 59.1 4.6e-151 532.7
Cme02g02113 . 41 393 B3 DNA Binding Superfamily AT5G20730 52.8 9.4e-104 375.6
Cme10g01685 . 6 360 B3 DNA Binding Superfamily AT5G20730 51.0 4.7e-95 346.7
Cme12g01152 CCT 97 861 B3 DNA Binding Superfamily AT5G37020 53.2 4.2e-187 651.7
Cme08g00111 CCT 97 464 B3 DNA Binding Superfamily AT5G37020 77.3 4.0e-161 565.5
Cme05g02083 CCT 96 362 B3 DNA Binding Superfamily AT5G37020 71.1 1.0e-108 391.3
Cme05g01243 . 115 472 B3 DNA Binding Superfamily AT5G37020 58.6 1.9e-107 387.1
Cme01g00630 . 54 288 B3 DNA Binding Superfamily AT5G37020 55.2 1.7e-71 267.7
Cme08g00264 . 149 434 B3 DNA Binding Superfamily AT2G33860 66.2 1.1e-108 390.6
Cme11g01785 . 168 451 B3 DNA Binding Superfamily AT2G33860 57.7 1.4e-90 330.5
Cme02g02113 . 147 436 B3 DNA Binding Superfamily AT2G33860 51.0 1.1e-76 284.3
Cme08g00111 CCT 127 358 B3 DNA Binding Superfamily AT2G33860 56.9 7.0e-71 265.0
Cme12g01152 CCT 127 358 B3 DNA Binding Superfamily AT2G33860 56.9 1.2e-70 264.2
Cme05g02083 CCT 126 356 B3 DNA Binding Superfamily AT2G33860 54.5 5.0e-69 258.8
Cme07g01536 . 130 357 B3 DNA Binding Superfamily AT2G33860 52.4 1.9e-68 256.9
Cme04g00486 . 51 309 B3 DNA Binding Superfamily AT2G33860 53.5 4.3e-68 255.8
Cme05g01243 . 145 376 B3 DNA Binding Superfamily AT2G33860 54.3 9.5e-68 254.6
Cme01g00630 . 61 288 B3 DNA Binding Superfamily AT2G33860 52.4 2.0e-65 246.9
Cme09g01853 . 129 356 B3 DNA Binding Superfamily AT2G33860 51.1 1.7e-64 243.8
Cme11g01785 . 48 802 B3 DNA Binding Superfamily AT5G60450 60.3 2.2e-250 862.1
Cme08g00111 CCT 7 377 B3 DNA Binding Superfamily AT5G60450 50.9 6.9e-103 372.1
Cme12g01152 CCT 7 377 B3 DNA Binding Superfamily AT5G60450 50.7 9.0e-103 371.7
Cme05g02083 CCT 14 374 B3 DNA Binding Superfamily AT5G60450 50.1 1.4e-98 357.8
Cme04g00486 . 1 286 B3 DNA Binding Superfamily AT5G60450 51.5 1.2e-78 291.6
Cme10g01685 . 5 673 B3 DNA Binding Superfamily AT1G59750 68.5 3.4e-247 851.3
Cme07g01536 . 19 667 B3 DNA Binding Superfamily AT1G59750 50.2 8.5e-158 554.3
Cme01g00630 . 1 341 B3 DNA Binding Superfamily AT1G59750 63.3 3.5e-119 426.0
Cme08g00111 CCT 23 383 B3 DNA Binding Superfamily AT1G59750 55.6 1.1e-107 387.9
Cme12g01152 CCT 23 396 B3 DNA Binding Superfamily AT1G59750 53.4 2.2e-105 380.2
Cme05g01243 . 20 412 B3 DNA Binding Superfamily AT1G59750 50.3 4.1e-104 375.9
Cme05g02083 CCT 23 358 B3 DNA Binding Superfamily AT1G59750 54.4 1.0e-102 371.3
Cme04g00486 . 1 281 B3 DNA Binding Superfamily AT1G59750 51.4 6.0e-79 292.4
Cme02g02113 . 36 828 B3 DNA Binding Superfamily AT5G62000 62.4 4.5e-284 974.2
Cme01g00630 . 1 288 B3 DNA Binding Superfamily AT5G62000 69.5 8.0e-116 415.2
Cme08g00111 CCT 20 376 B3 DNA Binding Superfamily AT5G62000 56.1 1.1e-109 394.8
Cme05g02083 CCT 23 380 B3 DNA Binding Superfamily AT5G62000 54.0 1.3e-105 381.3
Cme07g01536 . 19 670 B3 DNA Binding Superfamily AT2G46530 54.4 3.1e-178 622.1
Cme09g01853 . 18 671 B3 DNA Binding Superfamily AT2G46530 52.7 1.9e-175 612.8
Cme10g01685 . 13 663 B3 DNA Binding Superfamily AT2G46530 51.4 6.8e-165 577.8
Cme01g00630 . 1 326 B3 DNA Binding Superfamily AT2G46530 73.7 1.2e-132 470.7
Cme08g00111 CCT 1 368 B3 DNA Binding Superfamily AT2G46530 51.6 7.1e-98 355.1
Cme12g01152 CCT 1 368 B3 DNA Binding Superfamily AT2G46530 50.1 7.4e-95 345.1
Cme04g00486 . 1 281 B3 DNA Binding Superfamily AT2G46530 50.5 1.1e-74 278.1
Cme07g01536 . 55 670 B3 DNA Binding Superfamily AT3G61830 51.4 2.2e-159 559.3
Cme09g01853 . 54 678 B3 DNA Binding Superfamily AT3G61830 51.3 2.3e-156 549.3
Cme10g01685 . 53 644 B3 DNA Binding Superfamily AT3G61830 51.2 5.3e-153 538.1
Cme01g00630 . 1 324 B3 DNA Binding Superfamily AT3G61830 72.1 2.2e-135 479.6
Cme08g00111 CCT 51 364 B3 DNA Binding Superfamily AT3G61830 53.2 7.2e-86 315.1
Cme12g01152 CCT 51 364 B3 DNA Binding Superfamily AT3G61830 51.4 4.4e-83 305.8
Cme04g00486 . 1 281 B3 DNA Binding Superfamily AT3G61830 51.1 2.0e-75 280.4
Cme09g01853 . 20 672 B3 DNA Binding Superfamily AT4G23980 57.7 6.2e-198 687.6
Cme07g01536 . 1 667 B3 DNA Binding Superfamily AT4G23980 56.4 3.2e-194 675.2
Cme10g01685 . 16 644 B3 DNA Binding Superfamily AT4G23980 52.8 1.0e-168 590.5
Cme01g00630 . 2 456 B3 DNA Binding Superfamily AT4G23980 57.4 8.8e-136 481.1
Cme04g00486 . 1 281 B3 DNA Binding Superfamily AT4G23980 53.3 2.5e-82 303.5
Cme01g00630 . 2 320 B3 DNA Binding Superfamily AT1G34310 51.4 2.1e-91 333.6
Cme01g00630 . 2 320 B3 DNA Binding Superfamily AT1G34390 53.7 5.4e-95 345.5
Cme01g00630 . 2 320 B3 DNA Binding Superfamily AT1G34410 52.0 6.1e-94 342.0
Cme01g00630 . 2 310 B3 DNA Binding Superfamily AT1G35240 53.5 5.6e-92 335.5
Cme01g00630 . 2 320 B3 DNA Binding Superfamily AT1G35520 51.8 2.8e-91 333.2
Cme01g00630 . 2 320 B3 DNA Binding Superfamily AT1G35540 51.7 2.1e-94 343.6
Cme07g01536 . 25 229 B3 DNA Binding Superfamily AT1G43950 55.8 6.8e-59 224.2
Cme09g01853 . 24 228 B3 DNA Binding Superfamily AT1G43950 55.8 5.8e-58 221.1
Cme10g01685 . 19 227 B3 DNA Binding Superfamily AT1G43950 51.2 3.7e-57 218.4
Cme02g02113 . 41 246 B3 DNA Binding Superfamily AT1G43950 52.9 6.4e-57 217.6
Cme01g00630 . 2 160 B3 DNA Binding Superfamily AT1G43950 54.7 1.4e-40 163.3
Cme11g01803 . 3 688 B3 DNA Binding Superfamily AT2G28350 58.2 1.5e-210 729.6
Cme08g02302 . 13 696 B3 DNA Binding Superfamily AT2G28350 54.9 3.2e-197 685.3
Cme03g01275 . 13 686 B3 DNA Binding Superfamily AT2G28350 50.6 1.0e-171 600.5
Cme08g02302 . 14 696 B3 DNA Binding Superfamily AT4G30080 58.5 4.1e-216 748.0
Cme11g01803 . 4 688 B3 DNA Binding Superfamily AT4G30080 57.3 3.0e-211 731.9
Cme03g01275 . 8 689 B3 DNA Binding Superfamily AT4G30080 54.8 1.0e-198 690.3
Cme09g01901 . 52 166 B3 DNA Binding Superfamily AT1G01030 84.5 1.3e-53 207.2
Cme07g01632 . 62 171 B3 DNA Binding Superfamily AT1G01030 79.5 2.1e-48 189.9
Cme10g00289 . 179 287 B3 DNA Binding Superfamily AT1G01030 67.0 1.0e-37 154.5
Cme10g00289 . 16 344 B3 DNA Binding Superfamily AT1G25560 62.8 3.4e-108 388.7
Cme09g00779 . 34 307 B3 DNA Binding Superfamily AT1G25560 62.3 5.4e-90 328.2
Cme04g02367 . 41 159 B3 DNA Binding Superfamily AT1G25560 65.5 9.7e-39 157.9
Cme09g01901 . 53 161 B3 DNA Binding Superfamily AT1G25560 66.1 5.3e-37 152.1
Cme11g02307 . 96 211 B3 DNA Binding Superfamily AT1G25560 62.1 7.0e-37 151.8
Cme01g00041 . 1 217 B3 DNA Binding Superfamily AT3G19184 64.6 2.3e-67 252.7
Cme03g02021 . 6 228 B3 DNA Binding Superfamily AT3G19184 55.1 1.3e-54 210.3
Cme03g02019 . 4 227 B3 DNA Binding Superfamily AT3G19184 53.4 2.5e-50 196.1
Cme03g02021 . 51 226 B3 DNA Binding Superfamily AT5G42700 57.9 3.0e-52 201.8
Cme03g02019 . 51 229 B3 DNA Binding Superfamily AT5G42700 54.7 2.9e-47 185.3
Cme01g00041 . 62 217 B3 DNA Binding Superfamily AT5G42700 56.3 2.2e-42 169.1
Cme11g00493 . 16 380 B3 DNA Binding Superfamily AT3G18990 57.8 2.0e-103 372.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001618 3 2 2 3 3 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 1 3 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42031 PF02362 B3 1.10E-27 CL0405 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00289 Cme_Chr10 FPKM 14.404536 12.894488 20.956713 20.388519 39.532665 37.809036 39.250065 15.972226 16.527102 14.807908