Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme10g00289 | ATGGACGGGATTTGCATTGACGAAACAACTTCCACCGAATCTAAATCTCCACCGCCGGACAACAGTCTCTGCCGCGTCGGAAGTGGCGTCACCAGTGTGGTTCTGGATTCCGACTCCAGCGGCGGGGGAGTTGAAGCGGAGTCAAGGAAATTACCATCTTCCCGTTACAAAGGAGTGGTCCCACAGCCCAACGGCCGATGGGGGGCTCAGATTTACGAGAAGCATCAAAGAGTATGGCTGGGTACTTTCAACGAAGAGGATGAAGCAGCACGTGCTTACGACGTGGCTGCTCAACGTTTCCGTGGCCGTGACGCCGTTACTAATTTCAAGCCGTTAACACACGGCGGTGGTGAAGAAGACGACATCGTATCCGCTTTCCTCAACTCCCATTCCAAGGCGGAGATCGTCGACATGTTACGTAAGCATACTTATTTAGATGAACTCCACCAAAGCAAACGAAACGCTGGGTTATCCGGTTCCGATCGTAAACGAAACCGTTTGTTATCCGGTTCCGATGATGAACCGGAAACCGCTCGGGAACTTTTGTTTGAAAAAGCCGTAACTCCAAGCGACGTGGGGAAATTAAACCGTTTGGTCATACCAAAACAACACGCGGAAAAGAATTTCCCTCTCCAAACCGGTTCGACCGCTTCCTCGAAAGGTCTGTTGTTGAACTTTGAAGATGGAGGAGGGAAAGTCTGGCGGTTCAGGTACTCGTATTGGAATAGTAGCCAAAGCTATGTGTTGACGAAAGGATGGAGCCGGTTCGTGAAAGAAAAGAATTTGAAAGCCGGTGACATTGTTAGCTTCTTGAAATCGACCGGACAAGACAAACAGCTTTACATTGAATGGAAGGCACGAAAGGCTTCTACTACAACCGGGTCCGCTATCAACCCGGTTCAGACCTTTAGACTGTTTGGAGTTGACATTATCAAAGCTTCGCCGAATAGTGGGTGTAGTGAGAAGAGAAGGAGAGAGTTGGAATTTCTCACTTTACAATGTACCAAAAAACAAAGGATTGTCGGAGCATTGTAA | 1035 | 48.6 | MDGICIDETTSTESKSPPPDNSLCRVGSGVTSVVLDSDSSGGGVEAESRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLTHGGGEEDDIVSAFLNSHSKAEIVDMLRKHTYLDELHQSKRNAGLSGSDRKRNRLLSGSDDEPETARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGQDKQLYIEWKARKASTTTGSAINPVQTFRLFGVDIIKASPNSGCSEKRRRELEFLTLQCTKKQRIVGAL | 344 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1878784 | 1879958 | - | MELO3C012217.2.1 | Cme10g00289 | 339175 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme10g00289 | 344 | Pfam | B3 DNA binding domain | 183 | 284 | IPR003340 | GO:0003677 | |
Cme10g00289 | 344 | SUPERFAMILY | DNA-binding pseudobarrel domain | 181 | 275 | IPR015300 | - | |
Cme10g00289 | 344 | Gene3D | AP2/ERF domain | 54 | 111 | IPR036955 | GO:0003700|GO:0006355 | |
Cme10g00289 | 344 | SMART | rav1_2 | 55 | 116 | IPR001471 | GO:0003700|GO:0006355 | |
Cme10g00289 | 344 | SUPERFAMILY | DNA-binding domain | 54 | 110 | IPR016177 | GO:0003677 | |
Cme10g00289 | 344 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 14 | 344 | IPR044800 | GO:0003700 | |
Cme10g00289 | 344 | MobiDBLite | consensus disorder prediction | 156 | 173 | - | - | |
Cme10g00289 | 344 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cme10g00289 | 344 | CDD | B3_DNA | 182 | 270 | IPR003340 | GO:0003677 | |
Cme10g00289 | 344 | ProSiteProfiles | AP2/ERF domain profile. | 55 | 110 | IPR001471 | GO:0003700|GO:0006355 | |
Cme10g00289 | 344 | PANTHER | PROTEIN RAV1, PUTATIVE-RELATED | 14 | 344 | - | - | |
Cme10g00289 | 344 | Pfam | AP2 domain | 54 | 102 | IPR001471 | GO:0003700|GO:0006355 | |
Cme10g00289 | 344 | Gene3D | - | 170 | 297 | IPR015300 | - | |
Cme10g00289 | 344 | SMART | B3_2 | 183 | 288 | IPR003340 | GO:0003677 | |
Cme10g00289 | 344 | MobiDBLite | consensus disorder prediction | 154 | 173 | - | - | |
Cme10g00289 | 344 | CDD | AP2 | 54 | 109 | IPR001471 | GO:0003700|GO:0006355 | |
Cme10g00289 | 344 | ProSiteProfiles | B3 DNA-binding domain profile. | 183 | 288 | IPR003340 | GO:0003677 | |
Cme10g00289 | 344 | MobiDBLite | consensus disorder prediction | 7 | 24 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g01073 | Cme-Chr2:15752452 | Cme10g00289 | Cme-Chr10:1878784 | 5.02E-56 | dispersed | |
Cme09g00779 | Cme-Chr9:9587760 | Cme10g00289 | Cme-Chr10:1878784 | 4.76E-135 | dispersed | |
Cme10g00289 | Cme-Chr10:1878784 | Cme11g02307 | Cme-Chr11:30130044 | 8.48E-47 | dispersed | |
Cme10g00289 | Cme-Chr10:1878784 | Cme09g01901 | Cme-Chr9:23146679 | 1.23E-47 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42031 | PF02362 | B3 | 1.10E-27 | CL0405 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme10g00289 | K09287 | - | csv:101203784 | 665.225 |