Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00289 ATGGACGGGATTTGCATTGACGAAACAACTTCCACCGAATCTAAATCTCCACCGCCGGACAACAGTCTCTGCCGCGTCGGAAGTGGCGTCACCAGTGTGGTTCTGGATTCCGACTCCAGCGGCGGGGGAGTTGAAGCGGAGTCAAGGAAATTACCATCTTCCCGTTACAAAGGAGTGGTCCCACAGCCCAACGGCCGATGGGGGGCTCAGATTTACGAGAAGCATCAAAGAGTATGGCTGGGTACTTTCAACGAAGAGGATGAAGCAGCACGTGCTTACGACGTGGCTGCTCAACGTTTCCGTGGCCGTGACGCCGTTACTAATTTCAAGCCGTTAACACACGGCGGTGGTGAAGAAGACGACATCGTATCCGCTTTCCTCAACTCCCATTCCAAGGCGGAGATCGTCGACATGTTACGTAAGCATACTTATTTAGATGAACTCCACCAAAGCAAACGAAACGCTGGGTTATCCGGTTCCGATCGTAAACGAAACCGTTTGTTATCCGGTTCCGATGATGAACCGGAAACCGCTCGGGAACTTTTGTTTGAAAAAGCCGTAACTCCAAGCGACGTGGGGAAATTAAACCGTTTGGTCATACCAAAACAACACGCGGAAAAGAATTTCCCTCTCCAAACCGGTTCGACCGCTTCCTCGAAAGGTCTGTTGTTGAACTTTGAAGATGGAGGAGGGAAAGTCTGGCGGTTCAGGTACTCGTATTGGAATAGTAGCCAAAGCTATGTGTTGACGAAAGGATGGAGCCGGTTCGTGAAAGAAAAGAATTTGAAAGCCGGTGACATTGTTAGCTTCTTGAAATCGACCGGACAAGACAAACAGCTTTACATTGAATGGAAGGCACGAAAGGCTTCTACTACAACCGGGTCCGCTATCAACCCGGTTCAGACCTTTAGACTGTTTGGAGTTGACATTATCAAAGCTTCGCCGAATAGTGGGTGTAGTGAGAAGAGAAGGAGAGAGTTGGAATTTCTCACTTTACAATGTACCAAAAAACAAAGGATTGTCGGAGCATTGTAA 1035 48.6 MDGICIDETTSTESKSPPPDNSLCRVGSGVTSVVLDSDSSGGGVEAESRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLTHGGGEEDDIVSAFLNSHSKAEIVDMLRKHTYLDELHQSKRNAGLSGSDRKRNRLLSGSDDEPETARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGQDKQLYIEWKARKASTTTGSAINPVQTFRLFGVDIIKASPNSGCSEKRRRELEFLTLQCTKKQRIVGAL 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1878784 1879958 - MELO3C012217.2.1 Cme10g00289 339175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00289 344 Pfam B3 DNA binding domain 183 284 IPR003340 GO:0003677
Cme10g00289 344 SUPERFAMILY DNA-binding pseudobarrel domain 181 275 IPR015300 -
Cme10g00289 344 Gene3D AP2/ERF domain 54 111 IPR036955 GO:0003700|GO:0006355
Cme10g00289 344 SMART rav1_2 55 116 IPR001471 GO:0003700|GO:0006355
Cme10g00289 344 SUPERFAMILY DNA-binding domain 54 110 IPR016177 GO:0003677
Cme10g00289 344 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 14 344 IPR044800 GO:0003700
Cme10g00289 344 MobiDBLite consensus disorder prediction 156 173 - -
Cme10g00289 344 MobiDBLite consensus disorder prediction 1 24 - -
Cme10g00289 344 CDD B3_DNA 182 270 IPR003340 GO:0003677
Cme10g00289 344 ProSiteProfiles AP2/ERF domain profile. 55 110 IPR001471 GO:0003700|GO:0006355
Cme10g00289 344 PANTHER PROTEIN RAV1, PUTATIVE-RELATED 14 344 - -
Cme10g00289 344 Pfam AP2 domain 54 102 IPR001471 GO:0003700|GO:0006355
Cme10g00289 344 Gene3D - 170 297 IPR015300 -
Cme10g00289 344 SMART B3_2 183 288 IPR003340 GO:0003677
Cme10g00289 344 MobiDBLite consensus disorder prediction 154 173 - -
Cme10g00289 344 CDD AP2 54 109 IPR001471 GO:0003700|GO:0006355
Cme10g00289 344 ProSiteProfiles B3 DNA-binding domain profile. 183 288 IPR003340 GO:0003677
Cme10g00289 344 MobiDBLite consensus disorder prediction 7 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01073 Cme-Chr2:15752452 Cme10g00289 Cme-Chr10:1878784 5.02E-56 dispersed
Cme09g00779 Cme-Chr9:9587760 Cme10g00289 Cme-Chr10:1878784 4.76E-135 dispersed
Cme10g00289 Cme-Chr10:1878784 Cme11g02307 Cme-Chr11:30130044 8.48E-47 dispersed
Cme10g00289 Cme-Chr10:1878784 Cme09g01901 Cme-Chr9:23146679 1.23E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42031 PF02362 B3 1.10E-27 CL0405 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00289 K09287 - csv:101203784 665.225