Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00294 ATGTGTGGAGAGGATCAAGAAGAGGATCATCAACAACAACATCAAGGAGAGTGTTCACAAACAATTGAGAATATGTTTCAAGAACAACTTCTTCTCCAACAACAACTACAAAACAACGACGGCGACCAAAGCAACAACGATCATCATATGATATATGGAGTAGAACATCATCACCATGGAATTGGAAGATCAGGGTCGTTAATTTTTCCACCCGAAGTCATGCCTCCGATGCTGCAACCGTGGTCATCGCTTAATCCGTTTATGATCCCTCCACCACCACCGCCGCCGCTACCAACATCATTATCATGTTCATCGTCGTCTTATGGTAGTTTGTTTAACCGAAGGCCACCTAATTGTCTTCAATTTGCTTATGATGGTCCATCTTCGGCTGACCATCTAGGTCGAATCATATCGACGACGCTAGGACCGGTGGTTCATCCAGGTTCCACGGCTCCCTTTGGGCTACAAGCTGAGCTTGGGAAAATGAGTGCTCAAGAAATAATGGATGCTAAAGCTCTTGCAGCTTCTAAAAGCCATAGTGAAGCTGAGAGGAGAAGAAGAGAAAGAATCAACAACCATCTTGCTAAGCTAAGGAGCATACTCCCTAGTACCACTAAAACAGACAAAGCATCATTGTTAGCGGAAGTAATAGAACACGTGAAAGAGCTAAAACGACAAACATCAATAATAGCGGAAACAAGTCCAATACCAACAGAAGTTGATGAAGTAAGTGTAGATGATGCTTCAGAACAAGAGATGATGATGATAAGTAATAATGGATCAATATCATCATCAGCCAAATTTGTAATAAAGGCTTCTCTTTGCTGTGAAGACCGTTCAGATCTTCTTCCTGATCTCATCAAAACCCTCAAATCTTTACGTTTAACAACACTCAAAGCTGAAATTACAACACTTGGTGGTCGTTTAAGAAACGTTTTGTTCGTAACGGCTGACGAAGAACAACAACAACAGCATAATATTACATCTATTATTCAAGATGCCCTTAAAGCTGTCATTGAAAAAACTGCAGGGGATCATGATTCTTCTTCAGCAAATATCAAAAGACAAAGGACCACCACTACAAATAACATTAATAATAATAATAATAATATCCTTTAA 1119 40.04 MCGEDQEEDHQQQHQGECSQTIENMFQEQLLLQQQLQNNDGDQSNNDHHMIYGVEHHHHGIGRSGSLIFPPEVMPPMLQPWSSLNPFMIPPPPPPPLPTSLSCSSSSYGSLFNRRPPNCLQFAYDGPSSADHLGRIISTTLGPVVHPGSTAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSILPSTTKTDKASLLAEVIEHVKELKRQTSIIAETSPIPTEVDEVSVDDASEQEMMMISNNGSISSSAKFVIKASLCCEDRSDLLPDLIKTLKSLRLTTLKAEITTLGGRLRNVLFVTADEEQQQQHNITSIIQDALKAVIEKTAGDHDSSSANIKRQRTTTTNNINNNNNNIL 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1921317 1924730 - MELO3C012213.2.1 Cme10g00294 339180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00294 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 223 IPR011598 GO:0046983
Cme10g00294 372 PANTHER TRANSCRIPTION FACTOR BHLH30 75 364 - -
Cme10g00294 372 PANTHER TRANSCRIPTION FACTOR BHLH30 75 364 IPR045847 GO:0003700|GO:0006355
Cme10g00294 372 SMART finulus 180 229 IPR011598 GO:0046983
Cme10g00294 372 Pfam Helix-loop-helix DNA-binding domain 177 223 IPR011598 GO:0046983
Cme10g00294 372 Gene3D - 169 230 IPR036638 GO:0046983
Cme10g00294 372 MobiDBLite consensus disorder prediction 353 372 - -
Cme10g00294 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 230 IPR036638 GO:0046983
Cme10g00294 372 MobiDBLite consensus disorder prediction 346 372 - -
Cme10g00294 372 CDD bHLH_AtAIG1_like 169 246 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00742 Cme-Chr5:9047899 Cme10g00294 Cme-Chr10:1921317 4.89E-78 dispersed
Cme08g00732 Cme-Chr8:4883076 Cme10g00294 Cme-Chr10:1921317 5.00E-16 dispersed
Cme10g00294 Cme-Chr10:1921317 Cme12g01298 Cme-Chr12:21048851 3.58E-33 dispersed
Cme10g00294 Cme-Chr10:1921317 Cme02g01617 Cme-Chr2:23325650 7.77E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42033 PF00010 HLH 7.90E-13 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00294 - - cmo:103489248 610.527