Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00309 ATGTACAACTCTTATGTCAGCTCAGCTGTATATTCCATTCGGAGTAAAGGGCCTCTTTCCCATTGTTTTGATGAGCGCCCCATCTTCTTAAATGAAAGATGTAATGGAAACCCATTGAATCTTCCATCGTCATCATGTTGTTCTTGTTGTGTTTGTTATACATTTCCAACCCACAGAGTGCCTATAGGGTCTAGTATTTTCTATGGGACGAGGCAATCCACCCTGCTTCAATGGTCGATATCTAGGAGATTGATGATGGGTGGCCGAAACCGGTTCTGTTACACGCTTCCGGAATATGGGCGAGTTCTGGATTGTTATGAGGTTCCTTTTTCTGTAAGTGATGGTAGGACTTGTCATTGTAGTGAGGGAAGGAGATATAGAAGGTGTTGTATGGTTTCTGATAGTGATTGTGAATTTGACAAATCGGATGGATTTGATGAAGAGGACATTGCTGAGGCAATGATCAGTTTGATAAGGGAGGGTTTTGGAAGCCAGGAAAAAATTAAGTCATCTAAGAGAGTAGAAGTGGGAAACCAAAGAAAATGCGAAGTGAAGGAGAGGAATTTAAGTTCATTGAGACGAGTAGGACTGGAGAAAAAGGTGAGAAGAGGTGTCGAGGAGAAAATGGTAAGTTCAATTGAAAAGATAAGAGTAGATAGGAAAAGAGAGAGTAACCACCAGCGAGACAGAGAAGAGAGGAAAAACAATGAGTTTGGTTCTTTAAATAGTAAATGTAATAATAAAGTCGGATCAATAGCAGTTGAGTTGAGGAAAGATGGATATGGATTGATTGGTGATCAATTAGTTCATTCAAGAGCTGATAGGCAGAGTTTAAGAAAAGAAGGGTCCACTTGTTCATCTTATTATTCACTCTCCTCCTCTGGGGATATTGAGAGTGATGCTGAAGTTGAAGACAAGAAGGTACAATTTGTTGAAGAATCATCCAGTGGGTACAGATACGACTCTCCGAGTGATGTGGGGGAAAAGTTAGATGGGCAGGTCAAGGAAGCATTCAAGAGGCAAGCAGACGATGAGAGGGGACGAGAAGAGGAAACAGTAGTCCATGATACTACAGTTGGGAATAATGCCAATTGGCACTTGAAGAAGAACTCAGAGAATAAACTTTCTGAAACATCAACAACAGTAACATACTCCACAAGTGGAACCTCTGAGATGAACTCAAGATTGTCAAGGGCCAGGGATAGTGGTTCCGTAGGTACTTCAAGCACGAAGCAGTTTGTTGACAAGGGAGAGGAATTGAAAAAAGCTGCGACTATGAATGAGGAATCAAAACAATATGATGCATCAGGTAAGAAAGTGGGTGGTGTGTTTATAAATGAAAGGAAAAAACTTGCAGAAGTATCAGAAATAAGCCACAATAGTGCAGAAGAAATTTCTCGTTCTCATAAAAGACTAACCATTAAGAATGAAAACCTAGAATTCGATGCAAATCTAATCTCAAAAGCAAGCAACAATAATCATGGAACTGGCCGTCCTGTCCTTCAAGAAAAAAGTTCAAGACGAAGTTCGTCATTTCAACAACTTTTGGGAGTTTCAGAAAATAGGAAAACTGAGAGAGAAAGAATCTCTATCTCTCATCAGACAAGCCAGTCTGATGCAAGTGAAAGTACAGGTCTCCATGTATCTTCTAATCAAGAGGTTGAAGAAGGATATCATCAAATAGAAAATCCTCCCACTGGAGAAGTGGATTCGAGACAAAAATTTCTTCATCTTGGTGTTATATCAGTAATCAAAGAAGGTAATACCAACACCTCCGTTTCAAGTTCTGAAATTAGAACACAAAATGAGGAACAAAATGTAGCATTGGTTAAAGCATCAAATTTTGTGGCTAAAGACATAAAGTCTTCGACAGATCAGAAAGCTTCTCAGAGAGTTATTTCCAGAAAAGGTTCCCGAGATGGCTCTAACATTTCAGTGGTTCATGGCACTACACATTCTGAAAAAACATTTGAAAATAGAATCTCCAAGCAAGAAACTAATAAATCAGTAGTGGAAAAAACTGTCAAGGAAACCATAATAAGACATGGTCAAAATAATGATCGTGTGGTGCAAACTGAATCAGAAAAAGAGTCTAAAAATCATGTACAGAAACCAAAAGTTCAAGGATTCATTAATTTAAGTTCTCAAAGTAGTTATCAAGGGATTGGTGTGAATATTGATGAAAATAAAAGGTCACAGGCAGTATTAGTGCCTCCTCCATCCCAGCTTGCAGCTAGAGATTCACTGCGAATAGATTCTACTAGCGAAATGGGAAGCCAAGTAGTTTCCAGAAGAACATCAGGAAGCAGTTCAGGTGCTTCTTACATGCAGTCAGGAGGAAGTCCAGCTTTGGACCCTAAATCCTACCAAGGAGGTAGGGCAGATGAGAGTCTTGAGGAACCTGTGTACGTTATCACTCCTGATGATACTCTAGGTTCAGCTGACCGTTTAGAGAGATCATCTGCACAGTTTGTTGGTGAGTTCATGGAGAAGTCCAGAAATGAACTCTTAATTTCTGAAACCCATACAGAGAGAAATACCTCTGAGGTTGATTTACTACATGAAGAGAAGCATGGAGAAAGTGATTTGGTAGATTATCAAGGGAAGGACCATGACTCAAGGCGCTCATCTGGGAGTTCTGGAACCAAGGGTCCTTCTGATGAAATGTGGCATGTAATGGACTCGACTACCGAGCAGCCTCCCAAAAGTGATGATCCTGAGATTATTGCACACAGTGAGAATGCAATTGTCAAGAGAAGTGGCAAATCCTTGTGGAATGTCATTTCAGACATAGTCCGTCTCCGTTGGAACTCACGCACTGAAACCTCTGAGTCAGCTTTAAGATCAGGTGGAAGAAATTCACCAAACGAGTCTGTTAGTAATGAAACATGGTTTTCTGGCCGTGAACATGAGGAGAGCGACAATACAAAAATGGGAAGAACCACAGTTTCTGAATTCACTTCATTGGATCAGTTGGAAGAACCAAATCCTTCTGCCCAAGGCCAAGATTTATCTGATGATAAGAAAGTGAAAAGCAAATACTATGAAGTAGATACTCCATCTTCCCCAAATACAGTGGAACCCAACCCATCAGGTGGGACTTTGTTGGTTTCTGGAGAAGCGATTTTAACAGACGGTACGAAGGTTGATGTTATTTCTTCTGGTTTGGATATAGAACCGTCATCCTTACCACTGTCTACCCAAGGCATAAAACGATCTCCCATGATTCAAGAAATGTCTCATAGTAGTAAAACCGATGCCTTTGCAAGCAGCTCTACAGATCAGTTGGGGAATTCTTTTAATGCTAAATTATCAGAGACATCAACAACTGGAACCAAGGATGGGGAAGTGAAACAAAGAAAGCTTCAAAGAAACAAGCAAGTTCTAAAGGATCGGTTTGATGAATGGGAAGAAGCATACTTACTTGAAACTGAGCAGCGAAAAATTGATGAAATGTTTATGAGGGAAGCTCTAGCTGAAGCCAAGAAGGCTGCTGATACTTGGGAAGTGCCTGTTGGAGCAGTGTTGGTGAAACATGGTAAAATTATTGCTCGTGGCTGCAACCTGGTCGAAGAGTTGCGAGATTCTACAGCCCATGCCGAAATGATTTGTATTCGTGAGGCTTCGAAGCAATTAAAGACATGGAGGCTTGCTGAGACAACTCTCTACGTGACACTTGAGCCATGCCCTATGTGTGCTGGAGCGATACTACAGGCACGAATCGAGAATCTTGTTTGGGGAGCACCAAACAAGCTTCTTGGAGCTGATGGTAGCTGGATCAGACTTTTTCCCTATGGTGGAGAGGGAAATATCTCAGAACAGTCCGATAAGCCTTCTGCACCCGTCCACCCATTCCACCCAAAGATGACTATCCGACGAGGTGTATTGGCATCAGAATGTGCAGATACGCCATTGCTAGGGTTTGCTTTGGAAGAGAGTATTGGTTTGAATGAGTTAATAGATGGATGA 3969 41.19 MYNSYVSSAVYSIRSKGPLSHCFDERPIFLNERCNGNPLNLPSSSCCSCCVCYTFPTHRVPIGSSIFYGTRQSTLLQWSISRRLMMGGRNRFCYTLPEYGRVLDCYEVPFSVSDGRTCHCSEGRRYRRCCMVSDSDCEFDKSDGFDEEDIAEAMISLIREGFGSQEKIKSSKRVEVGNQRKCEVKERNLSSLRRVGLEKKVRRGVEEKMVSSIEKIRVDRKRESNHQRDREERKNNEFGSLNSKCNNKVGSIAVELRKDGYGLIGDQLVHSRADRQSLRKEGSTCSSYYSLSSSGDIESDAEVEDKKVQFVEESSSGYRYDSPSDVGEKLDGQVKEAFKRQADDERGREEETVVHDTTVGNNANWHLKKNSENKLSETSTTVTYSTSGTSEMNSRLSRARDSGSVGTSSTKQFVDKGEELKKAATMNEESKQYDASGKKVGGVFINERKKLAEVSEISHNSAEEISRSHKRLTIKNENLEFDANLISKASNNNHGTGRPVLQEKSSRRSSSFQQLLGVSENRKTERERISISHQTSQSDASESTGLHVSSNQEVEEGYHQIENPPTGEVDSRQKFLHLGVISVIKEGNTNTSVSSSEIRTQNEEQNVALVKASNFVAKDIKSSTDQKASQRVISRKGSRDGSNISVVHGTTHSEKTFENRISKQETNKSVVEKTVKETIIRHGQNNDRVVQTESEKESKNHVQKPKVQGFINLSSQSSYQGIGVNIDENKRSQAVLVPPPSQLAARDSLRIDSTSEMGSQVVSRRTSGSSSGASYMQSGGSPALDPKSYQGGRADESLEEPVYVITPDDTLGSADRLERSSAQFVGEFMEKSRNELLISETHTERNTSEVDLLHEEKHGESDLVDYQGKDHDSRRSSGSSGTKGPSDEMWHVMDSTTEQPPKSDDPEIIAHSENAIVKRSGKSLWNVISDIVRLRWNSRTETSESALRSGGRNSPNESVSNETWFSGREHEESDNTKMGRTTVSEFTSLDQLEEPNPSAQGQDLSDDKKVKSKYYEVDTPSSPNTVEPNPSGGTLLVSGEAILTDGTKVDVISSGLDIEPSSLPLSTQGIKRSPMIQEMSHSSKTDAFASSSTDQLGNSFNAKLSETSTTGTKDGEVKQRKLQRNKQVLKDRFDEWEEAYLLETEQRKIDEMFMREALAEAKKAADTWEVPVGAVLVKHGKIIARGCNLVEELRDSTAHAEMICIREASKQLKTWRLAETTLYVTLEPCPMCAGAILQARIENLVWGAPNKLLGADGSWIRLFPYGGEGNISEQSDKPSAPVHPFHPKMTIRRGVLASECADTPLLGFALEESIGLNELIDG 1322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2018909 2025404 - MELO3C012197.2.1 Cme10g00309 339195

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00309 1322 MobiDBLite consensus disorder prediction 940 963 - -
Cme10g00309 1322 MobiDBLite consensus disorder prediction 979 1003 - -
Cme10g00309 1322 CDD nucleoside_deaminase 1166 1261 - -
Cme10g00309 1322 MobiDBLite consensus disorder prediction 940 1031 - -
Cme10g00309 1322 MobiDBLite consensus disorder prediction 745 799 - -
Cme10g00309 1322 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 1148 1270 IPR002125 -
Cme10g00309 1322 Gene3D Cytidine Deaminase, domain 2 1138 1309 - -
Cme10g00309 1322 MobiDBLite consensus disorder prediction 374 411 - -
Cme10g00309 1322 MobiDBLite consensus disorder prediction 533 547 - -
Cme10g00309 1322 Hamap tRNA-specific adenosine deaminase [tadA]. 1154 1313 IPR028883 GO:0002100|GO:0008251
Cme10g00309 1322 MobiDBLite consensus disorder prediction 218 238 - -
Cme10g00309 1322 MobiDBLite consensus disorder prediction 964 978 - -
Cme10g00309 1322 PANTHER TRNA(ADENINE(34)) DEAMINASE, CHLOROPLASTIC 893 1303 - -
Cme10g00309 1322 MobiDBLite consensus disorder prediction 1017 1031 - -
Cme10g00309 1322 MobiDBLite consensus disorder prediction 487 547 - -
Cme10g00309 1322 MobiDBLite consensus disorder prediction 627 646 - -
Cme10g00309 1322 Pfam MafB19-like deaminase 1151 1250 IPR028883 GO:0002100|GO:0008251
Cme10g00309 1322 MobiDBLite consensus disorder prediction 836 906 - -
Cme10g00309 1322 Coils Coil 1119 1139 - -
Cme10g00309 1322 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 893 1303 - -
Cme10g00309 1322 SUPERFAMILY Cytidine deaminase-like 1133 1265 IPR016193 GO:0003824
Cme10g00309 1322 MobiDBLite consensus disorder prediction 836 877 - -
Cme10g00309 1322 MobiDBLite consensus disorder prediction 218 239 - -
Cme10g00309 1322 MobiDBLite consensus disorder prediction 487 519 - -
Cme10g00309 1322 MobiDBLite consensus disorder prediction 747 784 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00309 K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] - csv:101215576 2302.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00175 Cme-Chr2:1344663 Cme10g00309 Cme-Chr10:2018909 2.74E-16 dispersed
Cme02g01614 Cme-Chr2:23307910 Cme10g00309 Cme-Chr10:2018909 3.42E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g220 . . . . . . Bma14g01686 . . Cmo18g01080 . Cma18g01058 . Car18g00983 Sed08g1290 Cpe09g00259 . Bhi07g01388 Tan04g0923 Cmetu02g0302 Lac13g0441 Hepe10g1853 . . Cla05g02348 Cam05g2519 Cec05g2546 Cco05g2588 Clacu05g2514 Cmu05g2376 Cre05g2492 Cone13ag0870 Cone19ag0871 . . Lsi04g00307 Csa05g02561 Chy10g01101 Cme10g00309 . Blo11g00821 Bda07g01517 . Bpe11g01679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010359 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00309 Cme_Chr10 FPKM 13.172664 14.228948 16.380064 16.441759 14.211143 15.247844 16.424894 17.003119 17.932621 16.982779