Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00310 ATGCGAGAGATCGAGTCCAAGTCTTCGTATAAAACTTCAAGGTATCGGGGAAGAGTTAAATATATGGAAATCTTTACTTGTATCTCTCTGTTTTGCTCCTCCAACTATTTGGTGGCTTTCCGCCGAAACGCTTTGCTGTTGTACCGTGTAAATTGTGGGAACTTCAATCGGTGGGATACGAAAAAAATGAGCGGTGGCAGAAGGAGAAAGCTGCATTTTAGCAAGATCTACTCGTTTGCTTGTGGGAAAGCTTCTTTAAAGGATGATCATTCACAACTTGGGGGTCCGGGGTTTTCTCGAGTTGTTTTCTGCAACGAACCAGAGTGTTTTGAGGCAGAAATTCGTAACTATATAGACAATCGTATTAGTACTACTAAGTATACTCTAGCTACTTTCCTGCCCAAGTCATTGTTTGAGCAATTCAGGAGGGTGGCCAATTTCTATTTTTTGGTCAGTGGGATTCTCGCTTTTACTCCTCTTGCTCCTTACACGGCTGTCAGTGCGATCATCCCTCTTATTCTCGTCATTTCGGCCACAATGATCAAAGAAGGGATTGAGGATTGGAGGCGGAAAAAACAGTTAATAGGGGTTTGGGTTAATCAAGTAAGCATCCATAAATGCCAGGATATTGAGGTTAACAGTAGAAAGGTTAAAGTGCATCAAGGTGATGGAGTTTTTGATTACATAGAGTGGAAGAATCTGAGGGTGGGTGATATTGTTAGAGTGGAGAAGGATGAATTCTTTCCAGCCGATATCATCTTGCTTTCATCTAGTTATGAGGATGCAATCTGCTATGTTGAGACAATGAACCTTGATGGTGAGACAAATTTGAAACTAAAACAAGCATTGGAAGTGACTTCACACATGAACGAGGATTCTATGTTCAACAGCTTCAAGGCTATCATAAAATGTGAGGACCCAAATGCAAATTTGTACAGTTTTGTTGGTAGTATGGAGTTGGAAGATCAACCATATCCTCTGTCACCTCAACAACTACTCCTTCGAGACTCTAAACTTCGGAATACAGATTATATATATGGGGTGGCTGTCTTCACTGGTCGTGACACAAAAGTTATTCAAAATTCTACGGATCCACCTTCAAAGAGAAGCAAGGTTGAGAGGAAAATGGATAAAATTATATATATTTTGTTCTGTCTTCTATTTTTTCTTGCTCTTGTAGGATCTATATTTTTTGGCCTTGTGACTGACGATGATTTGGAAAATGGGAGAATGAAAAGATGGTATCTCAGGCCTGATGATGCGAGAATTTTCTTTGATCCAAAAAGGGCTCCAATAGCTGCAATTTTCCATTTTCTTACGGCACTGATGTTATATAACTACTTCATTCCAATCTCACTGTATGTATCAATAGAAATTGTCAAAGTTCTTCAGAGCATATTTATCAATCAAGATATTAATATGTATTATGAAGAAGCTGACAAACCTGCTCGTGCTCGCACCTCAAATTTGAATGAAGAACTTGGTCAAGTCGATACAATACTCTCTGACAAGACTGGAACACTGACCTGTAATTCAATGGAGTTTATTAAGTGTTCTATTGCAGGGAGGGCCTATGGACAGGGTTTCACAGAGGTAGAAAGGGCTATAGGTAGACAAAAGGATTCACCTCTGCATGAGGCTACAAACGGGGTGAATCACCATGAGGATGGCAATGATAAAGCTTCACATATCAAGGGCTTTAATTTTAAGGATGTTAGGATTATGAATGGGAATTGGGTTAACGAGCCTCATGCAGATGTCATTCAAATGTTTTTCCGTCTTCTTGCAACCTGTCATACCGCAATACCTGAAATCAATGAGGATAATGGAGAGGTTTCTTATGAGGCTGAATCTCCAGATGAAGCAGCATTTGTGATTGCAGCTAGAGAACTTGGCTTTGAGTTCTACAAAAGAACACAGACAAGTATATCACTCCATGAATTTGATCCTTCATTAGGCAAGAAAGTTGATAGGACATATAAACTGCTGCATGTTTTGGAGTTTAATAGTGCAAGAAAGCGGATGTCTGTTATAATAAGAGATGAAGAGGATAAAATATTATTATTCTGTAAAGGTGCAGACAGTATCATGTTTGAAAGGCTTGGAAAGAATGGAAGGGAGTTTGAAGAGGAGACCAAGGAACATGTCAATGAGTATGCTGATGCGGGATTGAGGACTTTGATACTTGCCTATCGTGAGCTTGAAGAGGAAGAATTCAGAGAATTTGACAACGAGTTCATGAAGGCCAAAAGTTCTGTTAGTGCAGATCGAGAATCATTGATTGAGAAAGTAACTGACAAAATCGAGAGGAATCTAATTCTTCTTGGCGCCACTGCTGTTGAGGACAAGCTTCAAAATGGGGTTCCTGAGTGCATTGACAAGCTTGCTCAGGCGGGAATTAAGATTTGGGTTTTGACCGGGGACAAAATGGAGACTGCCATTAATATTGGCTTACTGCGACAAGATATGAAGCAAATTGTTATTACTCTGGAGACACCAGAAATTCAGGCTATAGAAAAGACTGGGGATAAGGCTTCTATCACCAAGGCATCAATGCAATGCGTCCTTGATCAAATTACTCGAGGGAGAGCTCAGATGACTTCACCAAGTGGGTTATCTGAAGCATTTGCATTAATTATTGATGGAAAATCACTTTCTTATGCTTTAGAGGACAGTATGAAGGCATTGTTTCTTGAGGTAGCGACACATTGTGCTTCTGTTATTTGCTGCCGTTCATCTCCAAAACAGAAGGCACTGGTGACAAGGTTGGTTAAATCTGGAACACGGAAAACAACCTTAGCCATTGGCGATGGTGCCAATGATGTAGGGATGCTTCAAGAAGCTGACATTGGAGTTGGCATTAGTGGTGCGGAAGGAATGCAGGCCGTTATGTCAAGTGATGTTGCAATAGCACAGTTTAAATATTTAGAGCACTTGCTTCTTGTGCATGGACATTGGTGCTACAGAAGGATATCATCAATGATTTGCTACTTTTTCTATAAGAATATTACTTTTGGTTTTACCATATTCCTATACGAAGCATTCACATCATTCTCTGGGCAACCTGTATATAATGATTGGTTTTTATCACTTTACAATGTCTTCTTCTCGTCGCTTCCGGTGGTAGCTTTGGGAGTTTTTGATCAGGATGTATCTGCAAGACTCTGCCTCCAGTTTCCTCTCTTATACCAGCAAGGGGTGCAGAATGTTCTTTTCAGCTGGCTCCGAATACTCAGTTGGATGTTTAATGGATTGGGCAGTGCCGTGATCATTTTCATCCTATGCACTAAATCACTTGAGCATCAGGCTTTCAACTCCGATGGAAAAACTGCAGGGCGAGATATTCTGGGTGCAACAATGTACTCTTGTGTTGTTTGGGTTGTAAACTTGCAAATGGCGCTTGCTGTTAGTTACTTCACCTTGATACAACACCTCTTTATCTGGGGTTCAATTTCGATCTGGTACATTTTTCTCCTGATCTATGGGTCCATGACCCCCACCTTTTCGACCAATGCTTATAAGATCTTCATCGAAGTCCTTGCCCCTGGCCCTTCCTACTGGCTTGTGCTTCTATTTGTGGTCATCTCAACACTCATTCCTTACTTCTCCTACACAGCCATACAGACGAGGTTCCTTCCCATGTATCATCAAATGATTTTATGGATTAGGAATGAAGGGCAACTAGACAACCCAGAGTACTGTGGTATTTTACAGAACACTTCCACTTTCCGATCGACGAGCGTGGGTTCCACAGCACGGTTAGCGGCCAAAAGGGGCAAATTGAAGGAGAGAAACAAGAATGCTACTTGA 3810 40.94 MREIESKSSYKTSRYRGRVKYMEIFTCISLFCSSNYLVAFRRNALLLYRVNCGNFNRWDTKKMSGGRRRKLHFSKIYSFACGKASLKDDHSQLGGPGFSRVVFCNEPECFEAEIRNYIDNRISTTKYTLATFLPKSLFEQFRRVANFYFLVSGILAFTPLAPYTAVSAIIPLILVISATMIKEGIEDWRRKKQLIGVWVNQVSIHKCQDIEVNSRKVKVHQGDGVFDYIEWKNLRVGDIVRVEKDEFFPADIILLSSSYEDAICYVETMNLDGETNLKLKQALEVTSHMNEDSMFNSFKAIIKCEDPNANLYSFVGSMELEDQPYPLSPQQLLLRDSKLRNTDYIYGVAVFTGRDTKVIQNSTDPPSKRSKVERKMDKIIYILFCLLFFLALVGSIFFGLVTDDDLENGRMKRWYLRPDDARIFFDPKRAPIAAIFHFLTALMLYNYFIPISLYVSIEIVKVLQSIFINQDINMYYEEADKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGRAYGQGFTEVERAIGRQKDSPLHEATNGVNHHEDGNDKASHIKGFNFKDVRIMNGNWVNEPHADVIQMFFRLLATCHTAIPEINEDNGEVSYEAESPDEAAFVIAARELGFEFYKRTQTSISLHEFDPSLGKKVDRTYKLLHVLEFNSARKRMSVIIRDEEDKILLFCKGADSIMFERLGKNGREFEEETKEHVNEYADAGLRTLILAYRELEEEEFREFDNEFMKAKSSVSADRESLIEKVTDKIERNLILLGATAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGLLRQDMKQIVITLETPEIQAIEKTGDKASITKASMQCVLDQITRGRAQMTSPSGLSEAFALIIDGKSLSYALEDSMKALFLEVATHCASVICCRSSPKQKALVTRLVKSGTRKTTLAIGDGANDVGMLQEADIGVGISGAEGMQAVMSSDVAIAQFKYLEHLLLVHGHWCYRRISSMICYFFYKNITFGFTIFLYEAFTSFSGQPVYNDWFLSLYNVFFSSLPVVALGVFDQDVSARLCLQFPLLYQQGVQNVLFSWLRILSWMFNGLGSAVIIFILCTKSLEHQAFNSDGKTAGRDILGATMYSCVVWVVNLQMALAVSYFTLIQHLFIWGSISIWYIFLLIYGSMTPTFSTNAYKIFIEVLAPGPSYWLVLLFVVISTLIPYFSYTAIQTRFLPMYHQMILWIRNEGQLDNPEYCGILQNTSTFRSTSVGSTARLAAKRGKLKERNKNAT 1269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2035551 2042969 + MELO3C012196.2.1 Cme10g00310 339196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00310 1269 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 63 1263 - -
Cme10g00310 1269 SUPERFAMILY HAD-like 496 990 IPR036412 -
Cme10g00310 1269 SFLD Haloacid Dehalogenase 485 986 - -
Cme10g00310 1269 Gene3D - 192 363 - -
Cme10g00310 1269 SUPERFAMILY Calcium ATPase, transmembrane domain M 115 1213 IPR023298 -
Cme10g00310 1269 Pfam Phospholipid-translocating P-type ATPase C-terminal 963 1213 IPR032630 -
Cme10g00310 1269 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 508 776 IPR023299 GO:0000166
Cme10g00310 1269 SFLD p-type atpase 485 986 IPR044492 -
Cme10g00310 1269 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 903 1017 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme10g00310 1269 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 63 1263 - -
Cme10g00310 1269 SUPERFAMILY Calcium ATPase, transduction domain A 217 360 IPR008250 -
Cme10g00310 1269 Pfam Cation transport ATPase (P-type) 597 702 - -
Cme10g00310 1269 Gene3D - 776 975 IPR023214 -
Cme10g00310 1269 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 117 1219 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cme10g00310 1269 Pfam E1-E2 ATPase 213 436 - -
Cme10g00310 1269 PRINTS P-type cation-transporting ATPase superfamily signature 501 515 - -
Cme10g00310 1269 PRINTS P-type cation-transporting ATPase superfamily signature 935 954 - -
Cme10g00310 1269 CDD P-type_ATPase_APLT_Dnf-like 119 1095 - -
Cme10g00310 1269 Gene3D - 621 775 IPR023299 GO:0000166
Cme10g00310 1269 ProSitePatterns E1-E2 ATPases phosphorylation site. 503 509 IPR018303 -
Cme10g00310 1269 Pfam Phospholipid-translocating ATPase N-terminal 102 168 IPR032631 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00310 Cme-Chr10:2035551 Cme12g01906 Cme-Chr12:25173231 1.20E-23 dispersed
Cme01g00305 Cme-Chr1:2276988 Cme10g00310 Cme-Chr10:2035551 7.52E-163 transposed
Cme01g02833 Cme-Chr1:35261203 Cme10g00310 Cme-Chr10:2035551 0 transposed
Cme03g01122 Cme-Chr3:20705157 Cme10g00310 Cme-Chr10:2035551 0 transposed
Cme05g00789 Cme-Chr5:9872982 Cme10g00310 Cme-Chr10:2035551 0 transposed
Cme08g02098 Cme-Chr8:26574399 Cme10g00310 Cme-Chr10:2035551 0 transposed
Cme10g00473 Cme-Chr10:2997439 Cme10g00310 Cme-Chr10:2035551 0 transposed
Cme12g01907 Cme-Chr12:25173585 Cme10g00310 Cme-Chr10:2035551 1.63E-105 transposed
Cme10g00310 Cme-Chr10:2035551 Cme12g01904 Cme-Chr12:25160748 7.53E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00310 K01530 - csv:101207148 2272.28