Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00313 ATGGCGGCCGTATCACCGGCGCCTTTTTCATCTCCGTCTCCGGCTTCTCCCTCCACTCCATCTCTTTCGCCTCCTGCCGCATCTGATTCTCCACCCACTACTCCGTCACCGTCGCCGCCGCAACAATCGCCTCCTTCGAATCAGTCTGACTCCGCCACTCCTAGTTCATCTCCTCCGCCGCCGTCTCATCAACCATCTGCTACTTCACCTCCACCTACATCTGAAACTCCCCCGCCATCAACACCTGCATTGTCTCCTCCGCCGCCTCGGACGGTTCCGCCGGCAACTCCATCACCAACTACGCCCAATGCTCCACCCCCAACAACACCGGACCCTCCACCACCAGTAAGCTCCACTCCCCCAACGCCGTCTGATCCCCCACCAAATTCACCTCCACCTCCTGCAGCAGAGCCTCCTCAATCCCCTCCCCCACAATCATCAAAACCACCTGAAAATTCCCCTCCGCCGCCACCACCACCACCACCATCACAAGCAAATCCGCCGGACAATCCGTCCCCGCCGCCACAACCCACAAACCCACCTGAGAATTCACCCCCACCGCCACCATCAACACCTCCAGAAACCTCACCTCCCTCCCCAGCATCAATACCTCCTAGAAATTCACCGCCACCCCCACGGCTTTCTCCCCCTCCCGGTGAGCCCTCACCGGCAAGTCCTCCCAAGTCATCACTACCCCCATCTCCACCACCTCCGCCGTCGCGTCTTTCTCCTCCATTACCTTCTAAACCCCCCACATTGCCGTCGGGGAATCGTACGGGCGATGGTTCTGCTCCTAGTGATGGAAGTGCAAATTCAAATTCCAACAGCAATGGAGGGATCAGTAGTGGGGGTGTGATTGCCATTGGTGTAGCGGCAGGAATTATCGTGCTTTTCATAATTGGATTTGTTGTATGGTACATCAGAAAGCCAAGGAAAAATGATTCTGGGCGTGGAGGTTACATTATGCCATCCTCTCTGGGTTCCTCTCCTAAGTCGGAATCATCCCTTATGAAGGTCCATTCCTCAGTTCATCAAGACATACATGCCACCGGCAGTGGCAGTGGGAGTGGCAGTGGTGGAATATACACTCCAAAAGAGCCTGGTGGGCTGGGGAGTTCGAGGCCATTGTTTACATATGAGGAACTCTTCAACGCAACCAATGCATTTTCTACTCAGAACCTCTTAGGAGAAGGAGGATTTGGTTCTGTTTATAAAGGATATCTTCCAGATGGAAGAGTGGTTGCAGTGAAGGAGCTAAAGATTGGTGGTGGCCAAGGTGAGCTGGAATTCAAAGCTGAAGTCGAGATTATTGGTCGTGTACACCATCGCCATTTGGTTTCTCTTGTGGGCTATTGTATTTCAGAGCATCAAAGGTTGCTGGTCTATGATTACGTCTCTAACAATTCACTTTACTACCATCTTCATCTCAAAGGCAATGGTGAGCTCGTTCTGGAATGGGCAAAGCGCATTAAGATCGCAGCTGGTGCAGCCCGGGGCATTGCTTATCTTCATGAAGATTGTCATCCTCGAATTATCCACCGTGATATCAAATCCTCAAACATTCTTCTTGACGAAAATTTTGAAGCTCGGGTCTCGGACTTTGGGCTTGCCAAATTAGCTCTCGACGAACAAACTCATATAACAACTCGTGTTGTGGGAACTTTTGGATATGTTGCTCCTGAATATGCATCAAGTGGAAAGTTAACTGAGAGATCAGATGTATTTTCTTTTGGAGTTGTACTTCTCGAGCTGATTACTGGTCGAAAAGCTGTGGATGCATCCCAACCAATGGGGAACGAGAGCCTTGTCGAATGGGTGTTCGCTGATATGCATCAAATTCCCCAAACAGTTATTGATAAGTTACAGCTAAAACATTTACCAATGCTAGAAAATGGGGATTTTCAAACTCCCAAATCAAACTTTCCTGACAATGCTCTCATTTTTCAGGCTCGGCCTTTACTTAACCATGCACTTGACAATCAAGATTTCGAAAACTTGGTAGACCCAAGGCTTGGAAGGAACTATGACGAGAGTGAAATGTTGAGGATGATAGGAATAGCTGCTGCTTGCGTGCGTCACGCGTCTGCCAAGAGACCTCAGATGGGACAGGTTGTTAGAGCTTTTGATAGTTTAGCAACTGCAGATTTAAGTAATGGAATGAGATTTGGGGAGAGTCAAGCTTTCGACTCCGGTCAACAATCTGCCGAAATTAGATTTTTCCGAATGCTGGCATTCGGTAACCAAGATTACAGTTCAGATTTTTATAGCCAAGGTAGCTCAAATGCCTGA 2289 49.54 MAAVSPAPFSSPSPASPSTPSLSPPAASDSPPTTPSPSPPQQSPPSNQSDSATPSSSPPPPSHQPSATSPPPTSETPPPSTPALSPPPPRTVPPATPSPTTPNAPPPTTPDPPPPVSSTPPTPSDPPPNSPPPPAAEPPQSPPPQSSKPPENSPPPPPPPPPSQANPPDNPSPPPQPTNPPENSPPPPPSTPPETSPPSPASIPPRNSPPPPRLSPPPGEPSPASPPKSSLPPSPPPPPSRLSPPLPSKPPTLPSGNRTGDGSAPSDGSANSNSNSNGGISSGGVIAIGVAAGIIVLFIIGFVVWYIRKPRKNDSGRGGYIMPSSLGSSPKSESSLMKVHSSVHQDIHATGSGSGSGSGGIYTPKEPGGLGSSRPLFTYEELFNATNAFSTQNLLGEGGFGSVYKGYLPDGRVVAVKELKIGGGQGELEFKAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVSNNSLYYHLHLKGNGELVLEWAKRIKIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDENFEARVSDFGLAKLALDEQTHITTRVVGTFGYVAPEYASSGKLTERSDVFSFGVVLLELITGRKAVDASQPMGNESLVEWVFADMHQIPQTVIDKLQLKHLPMLENGDFQTPKSNFPDNALIFQARPLLNHALDNQDFENLVDPRLGRNYDESEMLRMIGIAAACVRHASAKRPQMGQVVRAFDSLATADLSNGMRFGESQAFDSGQQSAEIRFFRMLAFGNQDYSSDFYSQGSSNA 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2046577 2051217 - MELO3C012194.2.1 Cme10g00313 339199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00313 762 MobiDBLite consensus disorder prediction 316 336 - -
Cme10g00313 762 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8 116 755 - -
Cme10g00313 762 Pfam Protein kinase domain 390 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00313 762 ProSitePatterns Protein kinases ATP-binding region signature. 395 417 IPR017441 GO:0005524
Cme10g00313 762 PRINTS Proline rich extensin signature 54 70 - -
Cme10g00313 762 PRINTS Proline rich extensin signature 74 91 - -
Cme10g00313 762 PRINTS Proline rich extensin signature 5 17 - -
Cme10g00313 762 PRINTS Proline rich extensin signature 28 49 - -
Cme10g00313 762 MobiDBLite consensus disorder prediction 54 252 - -
Cme10g00313 762 MobiDBLite consensus disorder prediction 10 44 - -
Cme10g00313 762 ProSiteProfiles Protein kinase domain profile. 389 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00313 762 CDD STKc_IRAK 395 711 - -
Cme10g00313 762 Gene3D Transferase(Phosphotransferase) domain 1 465 722 - -
Cme10g00313 762 MobiDBLite consensus disorder prediction 253 275 - -
Cme10g00313 762 Gene3D Phosphorylase Kinase; domain 1 370 464 - -
Cme10g00313 762 SUPERFAMILY Protein kinase-like (PK-like) 371 706 IPR011009 -
Cme10g00313 762 ProSitePatterns Serine/Threonine protein kinases active-site signature. 511 523 IPR008271 GO:0004672|GO:0006468
Cme10g00313 762 MobiDBLite consensus disorder prediction 1 275 - -
Cme10g00313 762 SMART serkin_6 389 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00313 762 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 116 755 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00313 Cme-Chr10:2046577 Cme10g00523 Cme-Chr10:3371185 1.18E-158 dispersed
Cme10g00313 Cme-Chr10:2046577 Cme09g00179 Cme-Chr9:1371472 1.58E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65191 PF00069 Pkinase 3.70E-43 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00313 - - cmo:103489228 817.379