Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00319 ATGATTCAAATGGGAATTAGAATAAAAGTTTCCATTTTTCTCTTGTTGTTGTGGAACTTTTCTGGAAATGGTTTGCTTACTGAAAAAGGTGTTAATATTGAAGTTCAAGCTTTGATGGCTATTAAAGCTGCTTTGAAAGACCCACATTCTGTTCTTAATTGGGATGAAAACGCTGTGGATCCATGTAGTTGGAGCATGATTACTTGTTCTTCAGAGAAATTTGTCATTAGTTTAGGAGCTCCAAGTCAGAACTTGTCCGGTAGCTTGTCGCCCAGCATCGGAAATTTGACAAATCTTCAGTCTGTGCTTCTACAGGACAATAATATATCAGGAACAATTCCAATGGAGATTGGGAACATACCTAGCCTTGACACTCTTGATCTTTCAAGCAATGGCTTCCATGGAGAAATTCCCTCTTCTCTTTCCCATCTTAAGAGTCTTCAATATCTGAGACTAAATAACAACAGTCTTTCGGGGGCTATTCCTTCATCTTTGGCCAACATGACTCAGCTGGCATTGTTGGACCTGTCTTTTAATAATCTGAGTGGCCCATTGCCCAGATTACTAGCTAAAACCTACAAATTATTAATTTCATGTTCGAATTTACAAAGCCTTGCTGGGAATTCGCTCATTTGCTCACCTGGGTCAGAGCATAGCTGCAATGGAACTGCTCCACCTCTCTTATTTGCTGCCAATACATCTCAAAATCCACAACCTTCTGGGAGATCCAAGGGCCACAAATTAGCCTTAGCTTTTGGCTCAAGCCTTGGATGTGTTTTTCTGTTAACCATTGGGGTTGGCTTCTTTATTTGGTGGAGGCAACGACACAACCAGCAGATTTTCTTCGATGTTAATGATCAAAGATTTGAAGAAGTTTGCCTTGGGAATCTAAGGATTTTCCAGTTCAGAGAGCTTCAAGCCGCTACAAACAACTTCAGCGGTAAAAACTTGGTAGGAAAAGGTGGATTTGGGAATGTTTACAAAGGGTATCTTCAAGATGGTACAATTATAGCAGTGAAAAGGTTAAAAGATGGAAATGCAATGAGAGGAGAAATCCAATTCCAGACTGAAGTTGAGATGATCAGCTTAGCTGTGCACCGGAACCTCCTCCGTCTCTACGGATTCTGTATGACAACCACGGAAAGACTGTTGGTTTACCCCTATATGTCGAACGGCAGTGTTGCATCTCGTCTCAAAGCAAAGCCAGCTCTGGATTGGAGCACCAGGAAAAGAATAGCATTGGGAGCAGCAAGAGGGTTACTGTATTTGCACGAGCAATGTGATCCCAAGATTATACACAGAGATGTCAAGGCTGCAAATATATTGCTTGATGATTATTGCGAGGCTGTGGTGGGAGATTTTGGACTGGCAAAGCTGTTGGATCATAGAGATTCACATGTAACAACTGCTGTACGAGGAACTGTTGGCCATATAGCTCCTGAGTATCTCTCCACTGGCCAATCTTCCGAGAAAACTGATGTGTTTGGATATGGAATTCTTCTTCTTGAGTTGATCACAGGACAGAGAGCTCTTGAATTTGGAAAAGCTGTTAATCAGAAAGGAGCGATGCTTGATTGGGTGAGCAAGAAACAGTACCTGAAACAACTTGCTGTCAAGAAAATTCACCAAGAAAAGAAGCTTGAACTACTAGTTGATAAGGATCTAAGGAGCAATTATGACCGAATTGAACTAGAAGAAATGGTTCAAGTAGCTCTCTTATGCACACAGTATCTTCCAACCACCAGACCTAAGATGTCTGAAGTGGTCAGAATGCTTGAAGGGGATGGACTTGCGGAGAAATGGGAAGCTTCTCAGAGGGCAGATGCAAACAGATACAGAGTCAACGAGTTCTCTTCATCGGAGCGATATTCTGATCTTACAGATGACTCTTCCCTGCTTGCGCAAGCCATGGAGCTTTCTGGACCAAGATAA 1932 42.08 MIQMGIRIKVSIFLLLLWNFSGNGLLTEKGVNIEVQALMAIKAALKDPHSVLNWDENAVDPCSWSMITCSSEKFVISLGAPSQNLSGSLSPSIGNLTNLQSVLLQDNNISGTIPMEIGNIPSLDTLDLSSNGFHGEIPSSLSHLKSLQYLRLNNNSLSGAIPSSLANMTQLALLDLSFNNLSGPLPRLLAKTYKLLISCSNLQSLAGNSLICSPGSEHSCNGTAPPLLFAANTSQNPQPSGRSKGHKLALAFGSSLGCVFLLTIGVGFFIWWRQRHNQQIFFDVNDQRFEEVCLGNLRIFQFRELQAATNNFSGKNLVGKGGFGNVYKGYLQDGTIIAVKRLKDGNAMRGEIQFQTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVASRLKAKPALDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGYGILLLELITGQRALEFGKAVNQKGAMLDWVSKKQYLKQLAVKKIHQEKKLELLVDKDLRSNYDRIELEEMVQVALLCTQYLPTTRPKMSEVVRMLEGDGLAEKWEASQRADANRYRVNEFSSSERYSDLTDDSSLLAQAMELSGPR 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2096713 2100445 + MELO3C012186.2.1 Cme10g00319 339205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00319 643 Pfam Leucine rich repeat N-terminal domain 34 70 IPR013210 -
Cme10g00319 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Cme10g00319 643 ProSiteProfiles Protein kinase domain profile. 312 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00319 643 Pfam Protein kinase domain 315 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00319 643 ProSitePatterns Protein kinases ATP-binding region signature. 318 340 IPR017441 GO:0005524
Cme10g00319 643 SUPERFAMILY Protein kinase-like (PK-like) 296 596 IPR011009 -
Cme10g00319 643 SMART serkin_6 312 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00319 643 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 643 - -
Cme10g00319 643 SUPERFAMILY L domain-like 34 205 - -
Cme10g00319 643 Gene3D Ribonuclease Inhibitor 31 222 IPR032675 -
Cme10g00319 643 Pfam Leucine rich repeat 121 181 IPR001611 GO:0005515
Cme10g00319 643 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 11 643 - -
Cme10g00319 643 Gene3D Phosphorylase Kinase; domain 1 281 388 - -
Cme10g00319 643 Gene3D Transferase(Phosphotransferase) domain 1 389 612 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01026 Cme-Chr2:15194689 Cme10g00319 Cme-Chr10:2096713 0 dispersed
Cme03g02234 Cme-Chr3:29133232 Cme10g00319 Cme-Chr10:2096713 0 dispersed
Cme07g01730 Cme-Chr7:22801598 Cme10g00319 Cme-Chr10:2096713 0 dispersed
Cme08g00216 Cme-Chr8:1448170 Cme10g00319 Cme-Chr10:2096713 0 dispersed
Cme09g00162 Cme-Chr9:1255569 Cme10g00319 Cme-Chr10:2096713 0 dispersed
Cme09g01202 Cme-Chr9:16940827 Cme10g00319 Cme-Chr10:2096713 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65192 PF00069 Pkinase 5.40E-44 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00319 - - csv:101208127 1192.56