Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00320 ATGGGTGACGTTTTGGGGGTGGATCATTTAAGCGATCTGCCTCAGAGTATTATAGAATGCATTCTCACTAGGTTACCAATTAGAGATGCTATTAGAACAAGTATTTTATCTAGGAGATGGAGATACAAGTGGACTACTCTTACTCAACTTGTGTTTGATGATGATTGTGTTGCAATGTCCAATGATGGAATTTATGAAGACCTTATATATTTTATCACTCATGTTCTTTTTCTTCATGAAGGTCCAATTCACAAGTTCCATCTTTCTGCTACTTACTTGCAGAATACCCCAGATTTAGATCAGTGGTTGCTTTTTCTTTCAAGGAAAGGCATCAGGGAATTGATTATTGAATTAGGAGATGGGGAGTGGTTTAGGGTGCATTCTTGTCTTTTTAACTGTAGCAAATTGACCCTATTGGAGTTGTATCGTTGTGAATTGGATCCACCTCCTACCTTTAAGGGGTTTTTATGTTTGAAAAGCCTAAAACTTCATCAAGTTTTGATTGCACCTGAAGACATTGAAAGTCTTATTTCTAATTGTCCTCTTCTTGAGAGTTTGGCGCTTTCTTATTTTGATAGTCTAGTGCTTAATATCTGTGCTCCGAATCTTAAGTACCTCTATCTTGAAGGCGAGTTTAGAGACATATGTCTTCAAAACACGCCACTCTTGGTTTCAATTTCAGTTGCATTATATATGAATGATGAATCTGAGCCCTTTGGCGATATTTCTGATTGCAATTATGAAAAGTTTCTTGGTGGGGTGCCTTATCTTGAGAAACTTACAGGACATGTTTATTTCACGAAGAGTATTGAACTGCACCAAGTCAGCTTTGAAGATATGAACGAGATACTTGTAGTGCTTCGTTTGATTACCAGCTCCCCAAATTTGGAGGAACTTCAAATATCGGGCTCGTCAAATCCCGTGGCCGCTTCAGAAGCACCTGACTTGGACTTTTGGGAGAATGAATGCCCCTCGAACCTCACATTTGGTAAACTTAGAGTTGTGAAAGCGACAGATATGTCTGGTGTACCACACGAGATGGAATTTATTAAATATTTGCTTAGGAATTGCCCGGTACTTGAGATAATGAGTATCAGACCTTGTGTCTATGTTACTGATCGACGATTGAATATGTTGATTGAATTGTTAAAATTTAGGAGGGCTTCACCTGAAGCAGAAATTTTGTTCATCCAGGAATAG 1200 38.42 MGDVLGVDHLSDLPQSIIECILTRLPIRDAIRTSILSRRWRYKWTTLTQLVFDDDCVAMSNDGIYEDLIYFITHVLFLHEGPIHKFHLSATYLQNTPDLDQWLLFLSRKGIRELIIELGDGEWFRVHSCLFNCSKLTLLELYRCELDPPPTFKGFLCLKSLKLHQVLIAPEDIESLISNCPLLESLALSYFDSLVLNICAPNLKYLYLEGEFRDICLQNTPLLVSISVALYMNDESEPFGDISDCNYEKFLGGVPYLEKLTGHVYFTKSIELHQVSFEDMNEILVVLRLITSSPNLEELQISGSSNPVAASEAPDLDFWENECPSNLTFGKLRVVKATDMSGVPHEMEFIKYLLRNCPVLEIMSIRPCVYVTDRRLNMLIELLKFRRASPEAEILFIQE 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2100680 2102866 - MELO3C012185.2.1 Cme10g00320 339206

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00320 399 ProSiteProfiles F-box domain profile. 7 68 IPR001810 GO:0005515
Cme10g00320 399 Pfam F-box domain 10 42 IPR001810 GO:0005515
Cme10g00320 399 SUPERFAMILY RNI-like 109 384 - -
Cme10g00320 399 Gene3D Ribonuclease Inhibitor 84 389 IPR032675 -
Cme10g00320 399 Pfam FBD 332 365 IPR006566 -
Cme10g00320 399 PANTHER F-BOX PROTEIN-LIKE 7 370 - -
Cme10g00320 399 SUPERFAMILY F-box domain 6 62 IPR036047 GO:0005515
Cme10g00320 399 SMART 9598neu4hmm 325 397 IPR006566 -
Cme10g00320 399 PANTHER - 7 370 - -
Cme10g00320 399 Gene3D - 2 46 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00320 - - - csv:101208370 798.505
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g02051 Cme-Chr2:26527140 Cme10g00320 Cme-Chr10:2100680 2.57E-14 dispersed
Cme04g01167 Cme-Chr4:15987965 Cme10g00320 Cme-Chr10:2100680 2.53E-15 dispersed
Cme05g01271 Cme-Chr5:20746158 Cme10g00320 Cme-Chr10:2100680 4.62E-11 dispersed
Cme08g01201 Cme-Chr8:8474155 Cme10g00320 Cme-Chr10:2100680 1.64E-08 dispersed
Cme10g00320 Cme-Chr10:2100680 Cme11g01463 Cme-Chr11:21513153 1.05E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1028 . . . . . . . . . Cmo18g01091 . . . Car18g00992 Sed06g1833 . . Bhi07g01411 Tan04g0933 Cmetu10g0062 Lac13g0428 Hepe10g1843 . . . . . . . . . . . . . . . . Cme10g00320 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007651 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00320 Cme_Chr10 FPKM 163.984344 184.324829 120.062439 119.107513 171.978745 192.185516 164.793991 181.451828 175.769226 180.632614