Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00324 ATGCTTCCTGGTGAAATATCTGGCATCCAGTTTTTTCCGTCCGAAAACTCTTTTCAAATTCCTTCAAACATTGACATGATGCAGAATAGCTTTCAAACTCTCCATCATTTCAATGGCTTCTTAGGCAACCTCCCGATGTCTCACGTCCCCCATCCCAGCCATGAATTCCTTAAACAATCCTCAAGTTTTAGCTACAACTCAACATCTGATGATGCAGAGGAACAACAAAAGAGTATTATTGATGAAAGAAAGCAGAGGAGAATGATTTCTAATAGAGAATCAGCTCGTAGATCGCGGATGAGAAAACAGAAGCACCTTGATGAGCTTTGGTCTCAGGTACTTCGGCTTCGCACCGAGAACCATAAACTGATAGACAAGTTGAACCATGTATCTGATAACCACGAAAAGGTTCTTTTGGAGAATGCCAGGCTCAAGGAAGAAGCCTCCGATCTTCGTCAGATGCTCAGTGACCTGCAAATTGGCAGCCCTTACACTCCTTGCTTGAGTAACCTCGAAGATATTCCCTGCAACACTGCACATATGAGAGCTGAATCTTCATCATGCCAGTCCATCGCCAACTCCATAGATAACCTACTCCATTGA 603 43.45 MLPGEISGIQFFPSENSFQIPSNIDMMQNSFQTLHHFNGFLGNLPMSHVPHPSHEFLKQSSSFSYNSTSDDAEEQQKSIIDERKQRRMISNRESARRSRMRKQKHLDELWSQVLRLRTENHKLIDKLNHVSDNHEKVLLENARLKEEASDLRQMLSDLQIGSPYTPCLSNLEDIPCNTAHMRAESSSCQSIANSIDNLLH 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2130478 2131940 + MELO3C012181.2.1 Cme10g00324 339210

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00324 200 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 1 198 IPR044521 -
Cme10g00324 200 CDD bZIP_plant_GBF1 84 134 IPR045314 GO:0003700|GO:0006355
Cme10g00324 200 Gene3D - 81 137 - -
Cme10g00324 200 PANTHER BZIP PROTEIN (ATBZIP48) 1 198 - -
Cme10g00324 200 Coils Coil 127 161 - -
Cme10g00324 200 Pfam bZIP transcription factor 83 141 IPR004827 GO:0003700|GO:0006355
Cme10g00324 200 SMART brlzneu 79 143 IPR004827 GO:0003700|GO:0006355
Cme10g00324 200 SUPERFAMILY Leucine zipper domain 83 133 IPR046347 GO:0003700|GO:0006355
Cme10g00324 200 MobiDBLite consensus disorder prediction 60 79 - -
Cme10g00324 200 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 86 101 IPR004827 GO:0003700|GO:0006355
Cme10g00324 200 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 81 144 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00324 - - - csv:101209095 394.815
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02121 Cme-Chr3:28432159 Cme10g00324 Cme-Chr10:2130478 9.91E-16 dispersed
Cme06g02439 Cme-Chr6:31429038 Cme10g00324 Cme-Chr10:2130478 5.29E-11 dispersed
Cme10g00324 Cme-Chr10:2130478 Cme11g00136 Cme-Chr11:1373467 3.95E-18 dispersed
Cme03g00639 Cme-Chr3:10675887 Cme10g00324 Cme-Chr10:2130478 7.60E-26 transposed
Cme03g01717 Cme-Chr3:25770252 Cme10g00324 Cme-Chr10:2130478 1.08E-10 transposed
Cme05g01780 Cme-Chr5:26780074 Cme10g00324 Cme-Chr10:2130478 3.55E-15 transposed
Cme09g01206 Cme-Chr9:16955752 Cme10g00324 Cme-Chr10:2130478 5.38E-48 transposed
Cme10g00324 Cme-Chr10:2130478 Cme12g01912 Cme-Chr12:25197479 1.36E-08 wgd
Cme10g00324 Cme-Chr10:2130478 Cme09g00185 Cme-Chr9:1429205 1.98E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1021 . Blo16g01070 . . Bpe13g01357 Bpe10g00923 Bma14g01627 Bma15g00100 Cmo04g01636 Cmo18g01096 Cma04g00989 Cma18g01074 Car04g01617 Car18g00997 Sed06g1827 Cpe09g00249 Cpe01g01390 Bhi07g01419 Tan04g0937 Cmetu09g1500 Lac13g0423 Hepe10g1837 . . Cla05g02362 Cam05g2533 Cec05g2562 Cco05g2601 Clacu05g2528 Cmu05g2388 Cre05g2504 . . . . Lsi04g00324 Csa05g02545 Chy10g01085 Cme10g00324 Blo06g00950 Blo11g00811 Bda07g01496 . Bpe11g01623 . . Bma06g00750 . . Cmo15g00873 . . . Car15g00216 Cpe13g00999 . . . . . . . . . . . . . . . . . Chy09g00171 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006441 4 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42036 PF00170 bZIP_1 2.20E-13 CL0018 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00324 Cme_Chr10 FPKM 31.977598 33.396641 9.792857 9.169366 3.735667 4.212522 3.861181 30.386997 27.452621 27.378204