Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00325 ATGGCGTCTTCTCCCTCTCCCATTTCTCCACTATCTTTTACCAATCCAATATCAACATCAAGAACAAAACCAAAACCATTACCATTACCATTTCCAAACAAACCGCCGTCTTCATTCCCTCCTGCGTCGAATCCCACCCCCAAACCTCCGCCCAAGGAGCTCTACTTCAACCACGATGGCTCTACTTTTAAAAAACTTCAGATCGGAGTTAATTTGGTAGCGGAGCTGGTGGGTATTACCTTAGGACCGAAGGGGAGGAATGTGGTGCTTCAGAATAAATATGGACCGCCCAAGATCGTAAACGATGGTGAAACCGTCCTGAAAGAGATTGAGCTGGAAGATCCCTTAGAGAACGTTGGGGTGAAATTGGTGAGACAAGCTGGTGCTAAGACGAATGACCTTGCTGGTGATGGTTCCACTACATCTGTCGTTCTTGCCCAGGGATTGATTGCTGAGGGTATGAAGGTTATTGCATCTGGCATGAATCCTGTTCAAATTGCACGTGGGATTGAGAAGACTGCAAAAGCACTAGTTTCTGAGCTGAAATTGATGTCAAGAGAGGTTGAAGATCATGAGATAGCACACGTCGCGGCAGTTAGCGCAGGGAATGATTATGCTGTGGGAAATTTGGTTTCAGATGCCTTACGTCAAGTTGGATGGAAGGGAGTCGTCCAAATTGAGAAAGGGAAGAGTGTCGATAACAGTTTGCAAATTGTTGAAGGGATGCAATTTGATCGTGGATATTTATCCCCATACTTTGTGACTGATAGAAGGAAGATGGTAGTAGAATTCCATGATTGCAAGTTACTATTGGTCGACAAAAAAATTTCAGATCCAAAGGAGATGTTTAAAATATTGGACAGTGCAGTGAAAGAGAAATACCCAATTGTGATATTGGCAGAGGGCATTGAGCAGGAAGCTCTGGCTCCAGTAATTAGGAATAAACTTAGAGGTGTGCTGAAGGCAGCTGCTATCAAGGCTCCTGCCTTTGGCGAGCGCAAGAGTCACTATTTAGATGACATAGCCACCTTAACTGGAGCTACTGTGGTCAGAGAAGATAATGGATTGACGTTAGAAAAGACCGGCAAAGAGGTATTGGGCTCCGCTTGTAAGGTTGTTATATCAAAGGATTCCACACTAATAGTTACAGATGGGAATACTCGGGAAGCTGTTCAGAAAAGGGTCATACAAATTCAAAAGCTTATGGAGAACACTGAGGAAAAGTTTCCGAAGAAGATATTGAATGAGAGAATTGCAAGATTATCTGGGCGAATTGCAATAATTCAGGTAGGAGCACAAACTGAAGTTGAGTTGAAGGATAGACAGTTAAGGATCGAGGATGCTTTGAATGCATCAAAGGCTGCTATTGAAGAAGGTGTTGTTGTTGGTGGAGGTTGTTGTCTTTTAAGGCTGTCTACAAAGGTGGATGCTATAAAAAATGTCCTGGAAAATGACGAGCAGATGATTGGAGCCGAAATTTTCAAAAGGGCTTTGAGTTATCCTACAAAACTAATAGCGAGAAATGCCGGTGTCAATGGAAGTGTTGTTATAGATAAGATTCTAAGTAACAATGATCTGGATTATGGATATAATGCCGCCACAGACCGTTACGAGAATCTAATGAAAGCTGGTATCATGGATCCATCGAAGGTTGTTAGATGTTGCCTGGAGCACGCAGCTTCTGTTTCCAAAACTTTCCTGACATCCGATGCTGTTGTAGTTGATATGAAGGAATCACAGCTCATCCCAAGAAGAACACCGATGCCAATCTCAGGTAAATGA 1782 43.04 MASSPSPISPLSFTNPISTSRTKPKPLPLPFPNKPPSSFPPASNPTPKPPPKELYFNHDGSTFKKLQIGVNLVAELVGITLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAEGMKVIASGMNPVQIARGIEKTAKALVSELKLMSREVEDHEIAHVAAVSAGNDYAVGNLVSDALRQVGWKGVVQIEKGKSVDNSLQIVEGMQFDRGYLSPYFVTDRRKMVVEFHDCKLLLVDKKISDPKEMFKILDSAVKEKYPIVILAEGIEQEALAPVIRNKLRGVLKAAAIKAPAFGERKSHYLDDIATLTGATVVREDNGLTLEKTGKEVLGSACKVVISKDSTLIVTDGNTREAVQKRVIQIQKLMENTEEKFPKKILNERIARLSGRIAIIQVGAQTEVELKDRQLRIEDALNASKAAIEEGVVVGGGCCLLRLSTKVDAIKNVLENDEQMIGAEIFKRALSYPTKLIARNAGVNGSVVIDKILSNNDLDYGYNAATDRYENLMKAGIMDPSKVVRCCLEHAASVSKTFLTSDAVVVDMKESQLIPRRTPMPISGK 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2134324 2138988 + MELO3C012180.2.1 Cme10g00325 339211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00325 593 PRINTS 60kDa chaperonin signature 447 468 IPR001844 GO:0042026|GO:0140662
Cme10g00325 593 PRINTS 60kDa chaperonin signature 317 340 IPR001844 GO:0042026|GO:0140662
Cme10g00325 593 PRINTS 60kDa chaperonin signature 77 103 IPR001844 GO:0042026|GO:0140662
Cme10g00325 593 PRINTS 60kDa chaperonin signature 133 160 IPR001844 GO:0042026|GO:0140662
Cme10g00325 593 PRINTS 60kDa chaperonin signature 399 424 IPR001844 GO:0042026|GO:0140662
Cme10g00325 593 TIGRFAM GroEL: chaperonin GroL 52 578 IPR001844 GO:0042026|GO:0140662
Cme10g00325 593 ProSitePatterns Chaperonins cpn60 signature. 454 465 IPR018370 GO:0005524|GO:0006457
Cme10g00325 593 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 27 580 - -
Cme10g00325 593 SUPERFAMILY GroEL-intermediate domain like 191 255 IPR027410 -
Cme10g00325 593 Gene3D GroEL 241 422 IPR027409 -
Cme10g00325 593 SUPERFAMILY GroEL equatorial domain-like 60 573 IPR027413 -
Cme10g00325 593 Pfam TCP-1/cpn60 chaperonin family 73 576 IPR002423 GO:0005524
Cme10g00325 593 CDD GroEL 52 575 IPR001844 GO:0042026|GO:0140662
Cme10g00325 593 Gene3D - 187 459 IPR027410 -
Cme10g00325 593 SUPERFAMILY GroEL apical domain-like 234 425 IPR027409 -
Cme10g00325 593 MobiDBLite consensus disorder prediction 23 52 - -
Cme10g00325 593 Gene3D - 64 574 IPR027413 -
Cme10g00325 593 PANTHER CHAPERONIN 60 SUBUNIT BETA 4, CHLOROPLASTIC 27 580 - -
Cme10g00325 593 Coils Coil 388 408 - -
Cme10g00325 593 MobiDBLite consensus disorder prediction 1 22 - -
Cme10g00325 593 MobiDBLite consensus disorder prediction 1 54 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00325 K04077 groEL, HSPD1; chaperonin GroEL [EC:5.6.1.7] - csv:101209342 1056.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00353 Cme-Chr2:2917852 Cme10g00325 Cme-Chr10:2134324 0 dispersed
Cme10g00325 Cme-Chr10:2134324 Cme11g01824 Cme-Chr11:26428504 7.69E-173 dispersed
Cme12g01847 Cme-Chr12:24799860 Cme10g00325 Cme-Chr10:2134324 3.37E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1020 . . . . . Bpe10g00922 . Bma15g00101 . Cmo18g01097 . Cma18g01075 . Car18g00998 Sed06g1826 Cpe09g00248 . Bhi07g01420 Tan04g0938 Cmetu10g1844 Lac13g0422 Hepe10g1836 . . Cla05g02364 Cam05g2534 Cec05g2563 Cco05g2602 Clacu05g2529 Cmu05g2389 Cre05g2505 . . . . Lsi04g00325 Csa05g02544 . Cme10g00325 Blo06g00949 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001807 3 2 3 1 3 2 3 1 2 1 2 2 3 2 2 2 2 4 3 2 2 2 1 2 2 2 2 4 2 3 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00325 Cme_Chr10 FPKM 4.249771 5.800704 4.804586 5.362041 5.893681 4.698217 6.386366 9.560593 10.163296 9.422511