Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00326 ATGCAAGCAGACACTCTAACAATACATAAGCTTGCTGTTCTTCATCCAGTGAGACCTTTCATTAGAAGTTCTTTCCCGCGCTCAAAGCTTTTCTCTACTTTCGCTTTCATTCCCAAAGCTTCCCGCCAACCGGGCTCCTTCCGGTTGTCTCAGAATTCCTCCTTCAAGGGTGTGCGGTATGACAGTCCAGTAATGGGTGCAATGGAGTTATCTAATCTTGAAGATGTGGATTTGTTGGTGGAGATGTGCATTACGCATACATTGCCACCGGCTCTAACGCTTAAGCAGGGTCTGGAGAGTATAACTGAGGCTATTGAAAAGTTTAAATTAGAATCTCCACGTTCTTCCCAGGGAGTTTTCAGGTTTCAGGTGGCTGTTCCCCCGAGTGCGAAAGCTCTTTTGTGGTTCTGTTGTCAACCAGAGTCATCTGAAGTTTATCCTATCTTTTTCCTTTCCAATGAGAAGGACCCGACGATTAAGTCATTGTACTTGAATGATACCCGCGGTGTTTTTGGAATTGGTACTGCAATTTACTTTGCAAGCTTGTCTTCTACTTCATCAAAACAAAGTACATCGAAAAGGTATCTCATGAATGATTCAGCTCCTATTATGGCTTATGGTTTTGTCAATGCTAATACCGGGGAGACATCTTCACTAAAGAACGAGGCTGATCATTCATACTTTTGCATTCCCCAAATTGAGTTGAGTGAGTACGAGGGCATTTCTGTTCTCTCTGCAACACTTGCATGGAGTGAATCTTTCCCTTGTACATTTGAGGAAGCTCTCCATTCTTTGGGCTCATCTATCTACCAGATCAGTAATAATTTTCCATCTAGTGAAAACTGCCAGTACAAATATATGAGATCTTCATTAACTGCTTCAAAACTTGTGGATGGAACAAATCAGATGGCATACATGAAGGTGCTTTCTGTAGCTGGTGAAAGTGTCAGGACTGGCATCATGGAAATGGAGTCTTCACTCTTCCATCAGTTCTGCATTAGGGTTTCACCAAGTGTTGCCGTTGCATGTAATATGTTGGATCATATCAATGAAACTGGCCACTCAGAGCAACAGCATGCCAACATTAATGCTCTCTGGGCATCGCTCATAGTTGAAGAATGTTCTCGTCTTGGTTTGACGTATTTTTGCATAGCTCCTGGATCAAGATCATCCCCTCTTGCCATCGCTGCTGCAAGTCATCCCCTGATAACATGTATTGCATGCTTTGATGAACGCTCTCTTGCTTTTCATGCGATTGGGTATGCCAGAGGATCTCATAGCCCAGCAGTAGTAATCACATCATCTGGAACTGCTGTTTCAAATCTTCTTCCTGCTGTTGTTGAAGCTAGTCAAGACTTTCTTCCTCTTTTATTGCTCACAGCTGACCGTCCCTTGGAGCTACAGGATGCAGGAGCAAATCAAGCAATTAATCAGGTAAACCATTTTGGTTCATTTGTGAGGTTCTTCTTCAGTCTTCCTGCCCCAACTGATCAAATTCCCGCCAGAATGGTACTTACCACTCTTGATTCTGCTGTACATTGGGCAACTTCTTCACCCTATGGCCCCGTTCACATAAACTGTCCATTTAGAGAGCCACTGGAAAATAGTCCAAGCCCATGGAATTTGAGTTGCTTAAATGGATTACACATTTGGTTATCAAGCACTGAAGTTTTTACCAAATATATTCGACTTGAAGCATCTCCAACGTCTATTGATACTTTTGGTCATATGGCAGAGGTTTTGAAAGTAATCCATGGAGCCAGAAACGGAGTTCTACTTCTTGGATCAATTCAATCAGAGGATGAGATATGGGCTGCTTTTCTATTGGCCAAACATATTTCATGGCCCATAGTAGCTGATGTATTGTCTGGTTTACGATTAAGAAAGAGTTTGTCTCCCTTCCTAGAAATGGAAAATAACTTTTTCTTTATTGATCACCTTGATCATGCTTTGCTTTCAGACTCGGTGAGAAAATGGCTAAAATTTGACGTGATTATTCAGATTGGAAGCAGGGTAACAAGCAAACGTGTTTCAAAGTTGCTTGAGGAATGCAGTCCCTGTTCATACATTATGGTTGATAAGCATCCAGGTCGTCATGATCCATCACATATTGTAACCCATAGAATTCAAAGCACCGTCTTAGAGTTTGTTGGTTGTATACTTAAAGCTAATTTTCCTCTCAATAAGAGCAAGTTGACTGCTACTTTACGAGCATTGAATATGATGGTTGAATGGGAAATTCAATTTCAAATTTCTGCTAACTACTCCCTATCTGAGCCAGAAGTTGCTCAGGTAATCTCAGAAGCACTTTCATTTGATTCTGTTCTGTTCCTGGGGAACAGCATGCCAATCCGCGATGTGGATATGTATGCATATGGTTGGACAAAATGCAACGACAGTGTAGCTGCTATACCATTAAACTTACAAATGCCATTTTACTGGACATGGACTTCTGGAAATAGGGGAGCCAGTGGTATTGACGGACTTCTTAGCACAGCAGTTGGTTTTTCTGTTGGATGCAACAAACGAGTGCTTTGTGTAGTTGGAGATGTTTCTTTCCTTCATGATACAAATGGCTTAGCAATTCTGAACCAGAGGATGACGAGGAAACCTGTGACTGTCGTTGTAATCAATAATAATGGTGGGGCAATCTTCAGTCTCCTTCCTATCAAGGACAAAGTAGATGCAGCAATACTAGACCAATTCTTCCATACCTCTCACCAGGTTTCACTCCGAAACCTATGTGTGGCACATGGCCTGAAGCATTTACATGTACGGACAAAGATGGAACTTCAAGATGCTTTATGTTTGTCTCATCATGAAGAAAATGACTGCATAATCGAGGTCGAAAGTTCCATTGATGCCAATACTGCCTTCCACAGTGTCTTGAGGAAGTTCACTTGTCAAGCAGTAGATCATGGTTTACGCATCTTTTCAAGGCTTTATTCTGAAGAATCTGTTTCACCTGGACTCTTCCTCTGCAAGATTAGTAGAATGGAATGTACATTGTTCAGAATCCCGCTATGTGCTCCACCTACGACTTCATCTAGTTCTATTGATCAAGTCAGACGGGGGTTCTTCCGAGAAGGTTTTATTTTGTCTTTGTTTCTGGAGGATGGGAATCTTGGGCTTGGTGAGGTTTCACCCCTTGACATCCACAGAGAGAACCTACTAGATGTGGAAGAGCAACTTAAGTGTCTGATTCCTATATTAAAGGGAGCCAAGATCAGCAGCTCCATTCCTCTGCTACGGGGCTCGTTTTCGTCTTGGATTTTCCATGAACTGGGAATACCACCAAGTTCAATCTATCCAAGTGTTCGATGTGGTTTGGAAATGGCTGTTCTCCATGCCATAGCAGGGAGAAAAGATTGCAGCTTGTTAGATGTACTCCAGCATCAGTTAGATGAAGAAAAGAACTTGACAACTTCGTCAAAAGTTCAAATTTGTGGGCTTTTGGATTCCGGTGGAACTCCATCTGAGGTTGCTTATGTTGCTAAGACACTGGTCGAAGAAGGATTTCCTGCTATCAAGTTAAAGGTAGCCCGACAACGGAATGTCATGTATGATGCTGCTGTTGTACAGGAAGTAAGGAAGAAGCTTGGCAACCAAATAGAACTCCGCGTTGATGCCAATAGGAACTGGAGCTATGAAGAAGCTCTTTTATTTAGCTCTTTGGTGAAGGACTGTGGCCTCCAATATATTGAGGAACCAGTTATGGACGAAGATGCTATTATTAAATTTTGTGAAGAGAGTGGTTTGCCTGTTGCACTGGATGAAACTATCGATCGTATTCAAGATAATCCTGTGAAAGAACTTGCCAAGTATGCCCATCCAGGAATTGTTGCTATAGTTATAAAACCAAGTGTCGTTGGCGGATTTGAAAATGCAGCATTAGTAGCGAGGTGGGCACAGCAACATGGAAAAATGGCTGTTGTTAGTGCTGCATTTGAAAGTGGTGTAGGTTTGTCCGGATATGTACACTTATCCTGTTATCTGGAGCATCAGAATGCAGAAGTAAGAAAACTGATGAATATTCAACCAGCCCCATCTATAGCCCACGGTCTAGGAACTTACCGTTGGCTTGAAGAAGATGTAACTGTCAATCCTCTCAGAATTCGCCGTGATCCTCATAGTGGCATTATTGAAGCATCTATTGCTGAGGCTAATCAACTTTTAAAAAATTTTCAAATCAACCAGAAGTTTGTTTGTAGAAAATTTACTGACGGGCAAGTTCGCAGCTACAGATTAAGTGTAGACTCAAAGGGGTTCTCTTATTCAATTAAAGTTCTAGAGGTTGGACAAAGAACAAACGATAACGTGCTCTTCTTTCTTCATGGATTTCTTGGAACTGGTGAAGACTGGCTTACAATCATGAAAGGCGTCTCAGGTTCAGCCCGATGCATTTCTCTTGACCTGCCTGGTCACGGGGAATCAACAACAGAAAAGAACGATTGTGATGTTCATGGTGTGGTGGAACCAAGTTTTTCAATGGAGGTTGTTGCTGATCTAATGTATAAGTTGATTCAACATCTTGCTCCTGGCAAAGCTATAGTTAACATTGTAGGGTATTCAATGGGGGCTAGGATTGCCATGTACATGGCCCTGAGATTTGGTGATAAGATTGGAAGAGCTGTTATAATATCTGGAAGCCCTGGATTAAAAGACAAGATGGCAAGAAAAATCCGTAGAGTTAAAGATGATTCTAGAGCACGAATTCTTAAGCTCTATGGCTTACAAAGCTTTCTGGAAGCGTGGTATGGTGGGGAACTATGGAAAAGTTTAAGAGAACATCCACATTATAGTAAAATTATTGCCAGCCGATTGAAGCATGATGATGTGCAGCATCTGGCAAAAGCTCTATCTGAATTAAGCATTGGAAGGCAGCCGCAATTGTGGGATGAATTAAAATGCTGCGAAACACCTCTTTCGATCATTGTTGGGGAGAAGGATACAAAATTTAAGATAATTGCACAGAAAATTCTATCTCAAATCAATATGAGCAAGAAGATCAAAGATGAACCAGTTGTTGATCTCCATGAAATAGTTGAGATCCCGGACTCGGGACATGCTGCCCATCTGGAGAATCCTCTTGCTGTTGTCAATGCATTAAGTAGATTTCTAATAAGGAGAAGAACACAGCACTCTTCTAACGTGGATTTAGCAGTAGCAAGCATCAAGGCATTGAATGCCCCTGAGAATGCCATGACAATTGAAACACGTAGAAGAGTTTATTCTGAAGCTGCTTCTGGTGGGAAATGTCTTATCCAGACATGA 5274 41.81 MQADTLTIHKLAVLHPVRPFIRSSFPRSKLFSTFAFIPKASRQPGSFRLSQNSSFKGVRYDSPVMGAMELSNLEDVDLLVEMCITHTLPPALTLKQGLESITEAIEKFKLESPRSSQGVFRFQVAVPPSAKALLWFCCQPESSEVYPIFFLSNEKDPTIKSLYLNDTRGVFGIGTAIYFASLSSTSSKQSTSKRYLMNDSAPIMAYGFVNANTGETSSLKNEADHSYFCIPQIELSEYEGISVLSATLAWSESFPCTFEEALHSLGSSIYQISNNFPSSENCQYKYMRSSLTASKLVDGTNQMAYMKVLSVAGESVRTGIMEMESSLFHQFCIRVSPSVAVACNMLDHINETGHSEQQHANINALWASLIVEECSRLGLTYFCIAPGSRSSPLAIAAASHPLITCIACFDERSLAFHAIGYARGSHSPAVVITSSGTAVSNLLPAVVEASQDFLPLLLLTADRPLELQDAGANQAINQVNHFGSFVRFFFSLPAPTDQIPARMVLTTLDSAVHWATSSPYGPVHINCPFREPLENSPSPWNLSCLNGLHIWLSSTEVFTKYIRLEASPTSIDTFGHMAEVLKVIHGARNGVLLLGSIQSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSPFLEMENNFFFIDHLDHALLSDSVRKWLKFDVIIQIGSRVTSKRVSKLLEECSPCSYIMVDKHPGRHDPSHIVTHRIQSTVLEFVGCILKANFPLNKSKLTATLRALNMMVEWEIQFQISANYSLSEPEVAQVISEALSFDSVLFLGNSMPIRDVDMYAYGWTKCNDSVAAIPLNLQMPFYWTWTSGNRGASGIDGLLSTAVGFSVGCNKRVLCVVGDVSFLHDTNGLAILNQRMTRKPVTVVVINNNGGAIFSLLPIKDKVDAAILDQFFHTSHQVSLRNLCVAHGLKHLHVRTKMELQDALCLSHHEENDCIIEVESSIDANTAFHSVLRKFTCQAVDHGLRIFSRLYSEESVSPGLFLCKISRMECTLFRIPLCAPPTTSSSSIDQVRRGFFREGFILSLFLEDGNLGLGEVSPLDIHRENLLDVEEQLKCLIPILKGAKISSSIPLLRGSFSSWIFHELGIPPSSIYPSVRCGLEMAVLHAIAGRKDCSLLDVLQHQLDEEKNLTTSSKVQICGLLDSGGTPSEVAYVAKTLVEEGFPAIKLKVARQRNVMYDAAVVQEVRKKLGNQIELRVDANRNWSYEEALLFSSLVKDCGLQYIEEPVMDEDAIIKFCEESGLPVALDETIDRIQDNPVKELAKYAHPGIVAIVIKPSVVGGFENAALVARWAQQHGKMAVVSAAFESGVGLSGYVHLSCYLEHQNAEVRKLMNIQPAPSIAHGLGTYRWLEEDVTVNPLRIRRDPHSGIIEASIAEANQLLKNFQINQKFVCRKFTDGQVRSYRLSVDSKGFSYSIKVLEVGQRTNDNVLFFLHGFLGTGEDWLTIMKGVSGSARCISLDLPGHGESTTEKNDCDVHGVVEPSFSMEVVADLMYKLIQHLAPGKAIVNIVGYSMGARIAMYMALRFGDKIGRAVIISGSPGLKDKMARKIRRVKDDSRARILKLYGLQSFLEAWYGGELWKSLREHPHYSKIIASRLKHDDVQHLAKALSELSIGRQPQLWDELKCCETPLSIIVGEKDTKFKIIAQKILSQINMSKKIKDEPVVDLHEIVEIPDSGHAAHLENPLAVVNALSRFLIRRRTQHSSNVDLAVASIKALNAPENAMTIETRRRVYSEAASGGKCLIQT 1757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2139977 2157025 + MELO3C012178.2.1 Cme10g00326 339212

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00326 1757 SFLD muconate cycloisomerase 1027 1373 - -
Cme10g00326 1757 Gene3D - 358 554 - -
Cme10g00326 1757 Gene3D - 995 1133 IPR029017 -
Cme10g00326 1757 Pfam Middle domain of thiamine pyrophosphate 547 778 IPR032264 -
Cme10g00326 1757 ProSitePatterns Mandelate racemase / muconate lactonizing enzyme family signature 2. 1206 1237 IPR018110 GO:0009063
Cme10g00326 1757 Coils Coil 1755 1757 - -
Cme10g00326 1757 TIGRFAM menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 366 837 IPR004433 GO:0009234|GO:0030976|GO:0070204
Cme10g00326 1757 Gene3D - 1134 1378 IPR036849 -
Cme10g00326 1757 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 756 949 IPR029061 -
Cme10g00326 1757 SFLD o-succinylbenzoate synthase 1027 1373 - -
Cme10g00326 1757 Hamap 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 360 967 IPR004433 GO:0009234|GO:0030976|GO:0070204
Cme10g00326 1757 SUPERFAMILY Enolase N-terminal domain-like 995 1129 IPR029017 -
Cme10g00326 1757 Pfam Enolase C-terminal domain-like 1164 1348 IPR029065 -
Cme10g00326 1757 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 822 935 IPR011766 GO:0003824|GO:0030976
Cme10g00326 1757 TIGRFAM menC_gamma/gm+: o-succinylbenzoate synthase 1028 1339 - -
Cme10g00326 1757 Gene3D - 573 748 - -
Cme10g00326 1757 Gene3D alpha/beta hydrolase 1429 1708 IPR029058 -
Cme10g00326 1757 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 359 540 IPR029061 -
Cme10g00326 1757 CDD TPP_SHCHC_synthase 757 952 - -
Cme10g00326 1757 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 368 536 IPR012001 GO:0030976
Cme10g00326 1757 SUPERFAMILY alpha/beta-Hydrolases 1427 1707 IPR029058 -
Cme10g00326 1757 SUPERFAMILY Enolase C-terminal domain-like 1154 1374 IPR036849 -
Cme10g00326 1757 SUPERFAMILY DHS-like NAD/FAD-binding domain 522 737 IPR029035 -
Cme10g00326 1757 SMART MR_MLE_2 1158 1254 IPR013342 -
Cme10g00326 1757 Gene3D - 756 966 - -
Cme10g00326 1757 Pfam alpha/beta hydrolase fold 1439 1552 IPR000073 -
Cme10g00326 1757 CDD TPP_PYR_MenD 368 529 - -
Cme10g00326 1757 PANTHER 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE SYNTHASE 170 1709 IPR004433 GO:0009234|GO:0030976|GO:0070204
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00326 K14759 PHYLLO; isochorismate synthase / 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / o-succinylbenzoate synthase [EC:5.4.4.2 2.2.1.9 4.2.99.20 4.2.1.113] - csv:101217012 3274.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01902 Cme-Chr2:25485178 Cme10g00326 Cme-Chr10:2139977 8.71E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1016 . . . . . . . . Cmo04g01638 . . . Car04g01619 . . . Cpe01g01391 Bhi07g01424 . . . . . . Cla05g02365 Cam05g2535 Cec05g2564 Cco05g2603 Clacu05g2531 Cmu05g2391 Cre05g2507 . . . . Lsi04g00326 . Chy10g01084 Cme10g00326 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005896 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00326 Cme_Chr10 FPKM 50.203209 48.922714 23.159191 22.002636 24.668072 28.482195 26.08004 9.432587 11.310307 7.481231