Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00327 ATGGATATTGGCGACAGAGATAAATTTAGACTAGAAAGTAGCATAGAGGGTACTGTTAACTGTTCGAATAGCATGTCATCGGATTGGCAATTTGGCGAGACGACTCTCACGAGTATGCCGACTGGTTTGGTTTTGCCAGGAAATGTGGATGTAGTTAGGAATCAGGATATGGTTGGTTGTTCTTCTTCCACTGCTTCTGTGGTAGAGTCGTTTAGCTCCACTATCTGGGAACAATCAGCTCATTCTCAAAACTTGGGAATTAGCAACATTCAAGGCCATAACAACTCCAATACTTCAAATATAATAGGAATTAGTAAGGCCAGCGGCTGTCCAGTTTCTTCAAGCAGTGACATTGATAGAACACTTGACATCAGCTGGAACCTATCCCACAATATTTTAAAAGGGGGTGTTTACCTACCTAATATTCCGGGCATGCTCCCGCCGAGTTTGTCTCAACTTCCAGCTGATTCTTCATTCATTGAGCGTGCAGCCAGGCTTTCCTGCTTTAGTGGAGGGAATTTCGGTGATATTGTTGGACATTTCAACATTCCTGACCCTGTGGGTGTTTTTTCCAGAGGTATGGGAGTAATACCTGACAGATGGGATGAGATTCCACGAAACGGGTTAGGTTTGGCATCTGTGACGGGAGGACAATCTCAAAGAAACGTGATTAACAGTGAAACTTCAAAGCCTGTTTGTTTGACTAATGAACATGGAGCTACTGAAACGGATTCACCTAAAAATGGAAGCCCTTTGAAATTGGATGATCGTGGTAAACTTGCTGTTGATGGTTCTGCTAATGAATCTGATGAAGCTGAGTGTAGCGGTGGTGATGGTTTGGGTGAGCCATGCACGTTAGAGGCCACGGGTAAGGAACTTTCTGCCAAGGGTCTCGGCACGAGGAAAAGGAAAAGAAGTGGACAGAAGACTGAACTTGATCAAGCCAATGGACCTCTTCAACAAACTACTGTTTCACCAAAGGATGATGCTGAAACTCACCGAAAAAGAGATCAAAATCCGAATTCAACTGCAAACAAGGGTACAGGAAAACATGGTAAACAGGCATCTCAACCTTCTGATCCTCCAAAGGAAGAGTATATTCATGTTAGAGCTCGAAGGGGCCAGGCAACAAACAGCCATAGTCTTGCAGAGAGGGTAAGGAGGGAGAAGATCAGTGAGAGGATGAAGTTTCTTCAAGAACTAGTCCCTGGTTGCAGCAAGGTTACTGGAAAGGCAGTGATGCTTGATGAAATCATCAACTATGTCCAATCACTGCAACGACAAGTCGAGTTTTTGTCAATGAAACTTGCTACCGTAAATCCAAGGTTGGATATAAACATCGATGGAGTTGTAACCAAAGATATTCTTCAATCACGAGTTGGTCCATTGTCGACATTGGGATTTTCTTCGCATATGCCCGTTGCTTGTCCTCCACCTAATATTTCTCATCATGAACTTATCCCAAGCAATTTTCCTGCCATAGGGAGCTCTGAGATGTTAAGAAGCACAATGAATTCTCATATGACTCAGAGGTCTGGTGGATTTAAGAATCCTTCACAGATAAAGAATGTGTGGGATGGTGAACTCCAAAACATTGTGCAGATGAGCTTTGGGATGCCCACTCCCCCAAATTGTTAG 1638 43.59 MDIGDRDKFRLESSIEGTVNCSNSMSSDWQFGETTLTSMPTGLVLPGNVDVVRNQDMVGCSSSTASVVESFSSTIWEQSAHSQNLGISNIQGHNNSNTSNIIGISKASGCPVSSSSDIDRTLDISWNLSHNILKGGVYLPNIPGMLPPSLSQLPADSSFIERAARLSCFSGGNFGDIVGHFNIPDPVGVFSRGMGVIPDRWDEIPRNGLGLASVTGGQSQRNVINSETSKPVCLTNEHGATETDSPKNGSPLKLDDRGKLAVDGSANESDEAECSGGDGLGEPCTLEATGKELSAKGLGTRKRKRSGQKTELDQANGPLQQTTVSPKDDAETHRKRDQNPNSTANKGTGKHGKQASQPSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDINIDGVVTKDILQSRVGPLSTLGFSSHMPVACPPPNISHHELIPSNFPAIGSSEMLRSTMNSHMTQRSGGFKNPSQIKNVWDGELQNIVQMSFGMPTPPNC 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2169290 2172369 + MELO3C012177.2.1 Cme10g00327 339213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00327 545 MobiDBLite consensus disorder prediction 311 326 - -
Cme10g00327 545 PANTHER TRANSCRIPTION FACTOR BHLH49 19 545 - -
Cme10g00327 545 SMART finulus 381 431 IPR011598 GO:0046983
Cme10g00327 545 CDD bHLH_AtBPE_like 365 450 - -
Cme10g00327 545 MobiDBLite consensus disorder prediction 216 248 - -
Cme10g00327 545 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 375 425 IPR011598 GO:0046983
Cme10g00327 545 Gene3D - 372 445 IPR036638 GO:0046983
Cme10g00327 545 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 19 545 IPR024097 GO:0006355
Cme10g00327 545 MobiDBLite consensus disorder prediction 296 310 - -
Cme10g00327 545 MobiDBLite consensus disorder prediction 249 266 - -
Cme10g00327 545 MobiDBLite consensus disorder prediction 216 363 - -
Cme10g00327 545 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 373 443 IPR036638 GO:0046983
Cme10g00327 545 MobiDBLite consensus disorder prediction 341 355 - -
Cme10g00327 545 Pfam Helix-loop-helix DNA-binding domain 378 426 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02126 Cme-Chr3:28490178 Cme10g00327 Cme-Chr10:2169290 2.66E-38 dispersed
Cme06g00870 Cme-Chr6:5978443 Cme10g00327 Cme-Chr10:2169290 2.35E-60 dispersed
Cme09g01210 Cme-Chr9:17001923 Cme10g00327 Cme-Chr10:2169290 6.43E-82 dispersed
Cme10g00327 Cme-Chr10:2169290 Cme11g00114 Cme-Chr11:1054206 1.62E-41 dispersed
Cme12g01876 Cme-Chr12:24949054 Cme10g00327 Cme-Chr10:2169290 6.36E-35 dispersed
Cme10g00327 Cme-Chr10:2169290 Cme07g00258 Cme-Chr7:1678327 8.91E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42037 PF00010 HLH 6.10E-06 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00327 - - csv:101209589 1045.8