Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00349 TTCCATTTTCCAACAACACACTTAAAATTTGTCTTTTTCTTCTTCTCCTTCTCTTTAAAACCCTCTCCATATTTCCTAATTTTAATTCCATCATCATCTTCTTGTTCTTATTCTCTTCTTCTTCTTATTCCATTGTTTTACCAGAAAAAAAGAAGACAGACTAATTCATTCATGAGTAACTCCGAGGACAAATCTTCTATGGCGGATTTGGTTCAACCTTCTGAGCATTTCTGTTACGTCAAATGCAACTTCTGTAACACTGTTCTTGCGGTTGGGATTCCATGCAGACATTGGTTGGATACGGTGACAGTGAAATGTGGTCATTGTAGTAATCTCTCTTTTTTGAGCACAAGACCTCCTTTACAAGGCCAATGCATTGATCATCCTCTAACTTTTCAGTCTCAGGTTGGATTCTCCAATAATGATCATATTCGAAAGGGTGCTTCCACATCTTCCACTTCCACTGCCTCTTCAATAACAAATGATTCTCCAAATTTTGTTGTCAAACCCCCTGAGAAGAAACATAGACTCCCATCTGCTTACAATCGTTTCATGAAAGAGGAAATTCAACGTATCAAAGCTGCAAACCCAGAAATACCTCATCGAGAAGCATTTAGTGCAGCAGCAAAAAACTGGGCAAGATACATTCCTAATTCAGCTGCTGGGTCGGTTTCCGGGACTCACAACAACAACGGGTTTTTCAATTTTGCAGGAATGAAAGGGTTTATTAGGACAGTGGAAGATGGGACAAATCATATGGCTGTCTAA 768 39.06 FHFPTTHLKFVFFFFSFSLKPSPYFLILIPSSSSCSYSLLLLIPLFYQKKRRQTNSFMSNSEDKSSMADLVQPSEHFCYVKCNFCNTVLAVGIPCRHWLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLTFQSQVGFSNNDHIRKGASTSSTSTASSITNDSPNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHNNNGFFNFAGMKGFIRTVEDGTNHMAV 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2260905 2262649 - MELO3C034075.2.1 Cme10g00349 339235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00349 255 CDD HMGB-UBF_HMG-box 176 212 - -
Cme10g00349 255 Pfam YABBY protein 73 215 IPR006780 GO:0007275
Cme10g00349 255 SUPERFAMILY HMG-box 159 213 IPR036910 -
Cme10g00349 255 PANTHER PROTEIN CRABS CLAW 67 230 - -
Cme10g00349 255 PANTHER PROTEIN YABBY 6-RELATED 67 230 IPR006780 GO:0007275
Cme10g00349 255 MobiDBLite consensus disorder prediction 143 165 - -
Cme10g00349 255 Gene3D High mobility group box domain 161 219 IPR036910 -
Cme10g00349 255 MobiDBLite consensus disorder prediction 143 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00232 Cme-Chr5:1654360 Cme10g00349 Cme-Chr10:2260905 3.40E-36 dispersed
Cme06g02614 Cme-Chr6:33374327 Cme10g00349 Cme-Chr10:2260905 3.23E-12 dispersed
Cme10g00349 Cme-Chr10:2260905 Cme10g00537 Cme-Chr10:3422911 1.09E-23 dispersed
Cme10g00349 Cme-Chr10:2260905 Cme05g01908 Cme-Chr5:27768209 7.93E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42038 PF04690 YABBY 1.50E-53 CL0114 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00349 K25796 - csv:101219863 359.377