Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00349 TTCCATTTTCCAACAACACACTTAAAATTTGTCTTTTTCTTCTTCTCCTTCTCTTTAAAACCCTCTCCATATTTCCTAATTTTAATTCCATCATCATCTTCTTGTTCTTATTCTCTTCTTCTTCTTATTCCATTGTTTTACCAGAAAAAAAGAAGACAGACTAATTCATTCATGAGTAACTCCGAGGACAAATCTTCTATGGCGGATTTGGTTCAACCTTCTGAGCATTTCTGTTACGTCAAATGCAACTTCTGTAACACTGTTCTTGCGGTTGGGATTCCATGCAGACATTGGTTGGATACGGTGACAGTGAAATGTGGTCATTGTAGTAATCTCTCTTTTTTGAGCACAAGACCTCCTTTACAAGGCCAATGCATTGATCATCCTCTAACTTTTCAGTCTCAGGTTGGATTCTCCAATAATGATCATATTCGAAAGGGTGCTTCCACATCTTCCACTTCCACTGCCTCTTCAATAACAAATGATTCTCCAAATTTTGTTGTCAAACCCCCTGAGAAGAAACATAGACTCCCATCTGCTTACAATCGTTTCATGAAAGAGGAAATTCAACGTATCAAAGCTGCAAACCCAGAAATACCTCATCGAGAAGCATTTAGTGCAGCAGCAAAAAACTGGGCAAGATACATTCCTAATTCAGCTGCTGGGTCGGTTTCCGGGACTCACAACAACAACGGGTTTTTCAATTTTGCAGGAATGAAAGGGTTTATTAGGACAGTGGAAGATGGGACAAATCATATGGCTGTCTAA 768 39.06 FHFPTTHLKFVFFFFSFSLKPSPYFLILIPSSSSCSYSLLLLIPLFYQKKRRQTNSFMSNSEDKSSMADLVQPSEHFCYVKCNFCNTVLAVGIPCRHWLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLTFQSQVGFSNNDHIRKGASTSSTSTASSITNDSPNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHNNNGFFNFAGMKGFIRTVEDGTNHMAV 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2260905 2262649 - MELO3C034075.2.1 Cme10g00349 339235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00349 255 CDD HMGB-UBF_HMG-box 176 212 - -
Cme10g00349 255 Pfam YABBY protein 73 215 IPR006780 GO:0007275
Cme10g00349 255 SUPERFAMILY HMG-box 159 213 IPR036910 -
Cme10g00349 255 PANTHER PROTEIN CRABS CLAW 67 230 - -
Cme10g00349 255 PANTHER PROTEIN YABBY 6-RELATED 67 230 IPR006780 GO:0007275
Cme10g00349 255 MobiDBLite consensus disorder prediction 143 165 - -
Cme10g00349 255 Gene3D High mobility group box domain 161 219 IPR036910 -
Cme10g00349 255 MobiDBLite consensus disorder prediction 143 174 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00349 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101219863 359.377
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00232 Cme-Chr5:1654360 Cme10g00349 Cme-Chr10:2260905 3.40E-36 dispersed
Cme06g02614 Cme-Chr6:33374327 Cme10g00349 Cme-Chr10:2260905 3.23E-12 dispersed
Cme10g00349 Cme-Chr10:2260905 Cme10g00537 Cme-Chr10:3422911 1.09E-23 dispersed
Cme10g00349 Cme-Chr10:2260905 Cme05g01908 Cme-Chr5:27768209 7.93E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g12 . Blo16g01078 . . . . . . Cmo04g01795 Cmo18g01120 . Cma18g01098 . Car18g01013 Sed07g2037 Cpe09g00228 Cpe01g01514 Bhi07g01472 Tan04g0975 Cmetu10g1095 . . . . . . . . . . . Cone13ag0895 Cone19ag0892 . . Lsi04g00355 Csa05g02521 . Cme10g00349 . . . . . . . . . . . Cma04g01709 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme10g00349 . 60 240 C2C2-YABBY Transcription Factor Family AT1G69180 53.5 1.3e-44 176.4
Cme05g00232 . 1 169 C2C2-YABBY Transcription Factor Family AT1G08465 65.3 2.7e-53 205.3
Cme05g01908 . 8 173 C2C2-YABBY Transcription Factor Family AT2G26580 71.7 2.4e-61 231.9
Cme05g00232 . 1 172 C2C2-YABBY Transcription Factor Family AT2G26580 58.9 2.2e-46 182.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004928 1 2 1 1 1 2 1 2 2 0 1 2 2 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42038 PF04690 YABBY 1.50E-53 CL0114 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00349 Cme_Chr10 FPKM 18.247917 20.700277 11.589424 10.819437 12.279911 11.452449 11.11015 8.940732 10.880651 11.618093