Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00350 ATGGCTCTATGTGGGGATCATAAAGATAGAGAAGTGAGGATCCATGAAAGTTTGGAGGAGCTAAGTACTGATTTAGCTGACTATATTGCTGAATTATCAGAGGCATCTGTGAAAGAACGTGGGGTGTTTTCTATTGCGTTATCTGGTGGTTCTCTGATTAGCTTAATGGGAAAGCTCTGTGAAGCTCCTTATAACAAGACTGTCGACTGGGCCAAGTGGTATATATTTTGGGCTGATGAACGTGTTGTTGCAAAAAGCCATGCCGACAGCAATTATAAGCTTGCAAAGGATAACCTTCTTTCCAAGGTTCCAATTGTTCCCAGCCATGTACACTCGATCAATGATTCAGTGTCAGCTGAGGAAGCTGCTGATGAGTACAAGTTCGTCATTCGACAATTAGTTAAATCCCGCATCGTAAGTGTGTCCGATGTGAGTGACAGCCCCAAGTTTGACCTCATACTACTTGGAATGGGTTCTGATGGTCACGTTGCCTCATTATTCCCTGATCACTCGGAGCTCGAGGAGAAAGATGAATGGGTTGCCTTCATCACCGATTCTCCAAAACCTCCACCAGAGAGAATCACCTTCACATTGCCTGTGATCAACTCTGCATCAAATGTGGCAATTGTTGTGACAGGTGAAAACAAAGCAGAGACCGTACATTTAGCCATCGACGACATAGGACCAGACTGCCCACTCCTACCTGCAAGGTTGGTACAGCCAAGAAAAGGAAAACTGACATGGTTTTTGGATAACAACGCCGCTTCAAAACTCGACAATTACCAATTTTCCGAGTAG 798 44.49 MALCGDHKDREVRIHESLEELSTDLADYIAELSEASVKERGVFSIALSGGSLISLMGKLCEAPYNKTVDWAKWYIFWADERVVAKSHADSNYKLAKDNLLSKVPIVPSHVHSINDSVSAEEAADEYKFVIRQLVKSRIVSVSDVSDSPKFDLILLGMGSDGHVASLFPDHSELEEKDEWVAFITDSPKPPPERITFTLPVINSASNVAIVVTGENKAETVHLAIDDIGPDCPLLPARLVQPRKGKLTWFLDNNAASKLDNYQFSE 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2266935 2269528 - MELO3C012159.2.1 Cme10g00350 339236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00350 265 Pfam Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 18 248 IPR006148 GO:0005975
Cme10g00350 265 TIGRFAM pgl: 6-phosphogluconolactonase 14 258 IPR005900 GO:0005975|GO:0006098|GO:0017057
Cme10g00350 265 PANTHER 6-PHOSPHOGLUCONOLACTONASE 1 265 IPR039104 -
Cme10g00350 265 Coils Coil 18 38 - -
Cme10g00350 265 Gene3D - 7 261 - -
Cme10g00350 265 SUPERFAMILY NagB/RpiA/CoA transferase-like 11 260 IPR037171 -
Cme10g00350 265 CDD 6PGL 19 250 IPR005900 GO:0005975|GO:0006098|GO:0017057
Cme10g00350 265 PANTHER 6-PHOSPHOGLUCONOLACTONASE-RELATED 1 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g02009 Cme-Chr9:23831376 Cme10g00350 Cme-Chr10:2266935 2.70E-93 dispersed
Cme09g02011 Cme-Chr9:23835309 Cme10g00350 Cme-Chr10:2266935 9.46E-83 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00350 K01057 - csv:101210739 498.049