Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00355 ATGGGGGAAGCAAACCAAGGAGGAAGTAGAGGAATGGAGAAAGTTTCTCTACAAACTGAAAAGTACCCAACAGATCTGTTGCAGAGATTTTTATGTAGCAATTCACATCAGACCCAAATTGGGAGAGCTTTTAATGAAGAAGAAGAAGAAGATACAGAGGAGATTGAGCTTAATCTTGGGCTTTCACTTGGGGGTCGATTTGGGGTTGACAAAAATTCCAAGAAGCTTATTCGGTCATCTTCCATAGCTGGTACCATGCTTTTGAGGGACGATGACGCTTCTACTCCTGCAGCTGTGTCGTACCCGGCGGCGATTATTCGCACCTCGTCTCTTCCGCCGGAGACAGAGGAGGAGTGGAGGAAGAGGAAGGAATTGCAGACGTTGAGGCGAATGGAGGCCAAAAGGAGGCGGTTTGAGAAGCAGAGGAATAAGGATGGGATTGGGATTGGGATGGGAACTAGTGGGTGTTTTGAAGAAGAGAGGCGTGAAATTGAAGGTCTTACAGGATTGAATTTGAGAGAGAAAAGGCATGGTTCCGGTATTTCGACGACGGTGGCACCGCCATTTGGGTTACCGACGTGGGCTGCAGCTGCTCGACAGGCTCTTACTGGCGGAATTATGGATGAGATTAGCAAAGGCAAAGGTGGCTGTACATCCGGTGGCGGCGGAGGCACTAACGGCGGAGGTTTTCCGGGTGTCGGACAGCCCGCCTCTCAGTGCTCTGCCGAATCGCAGGGCGGAAGCTCATCGGGGATGTCCGAATTGGATAGCAAACAGATCCAAGGATCTAGCAGTTACGGTGAAGCGAGAAGCTCCTCACAAGAGCGAGGCAACCTAGAGGCTGCAGGTTCTTCAGGATCGAAGATGTGTGAGAACCCATCTGCCAGTTCCAAAACAGAGACGAAAAATCAATCCAAGAAACCTGATTCAGGCGAGAACAAGGGAAGGGAAGCGGCAACGATGTCAATGGAAGACATGCCTTGTGTGTTCACGATAGGGGACGGGCCAGATGGGAGAAGGGTGGAAGGAATTCTTTACAAGTATGGAAAAGGGGAGGAAGTGAGGATAATGTGTGTTTGCCATGGGAAATTTCTGTCACCAGCTGAGTTTGTGAAGCATGCTGGTGGAAAAAATAGTGAATCATGTCTTGAAAGAGAATTTTTGAATGGCTCTCAGTTGGAGATTTTATGGATCAAGGTGGTTCGTATTTCTTCTTCCTTTTAA 1224 48.69 MGEANQGGSRGMEKVSLQTEKYPTDLLQRFLCSNSHQTQIGRAFNEEEEEDTEEIELNLGLSLGGRFGVDKNSKKLIRSSSIAGTMLLRDDDASTPAAVSYPAAIIRTSSLPPETEEEWRKRKELQTLRRMEAKRRRFEKQRNKDGIGIGMGTSGCFEEERREIEGLTGLNLREKRHGSGISTTVAPPFGLPTWAAAARQALTGGIMDEISKGKGGCTSGGGGGTNGGGFPGVGQPASQCSAESQGGSSSGMSELDSKQIQGSSSYGEARSSSQERGNLEAAGSSGSKMCENPSASSKTETKNQSKKPDSGENKGREAATMSMEDMPCVFTIGDGPDGRRVEGILYKYGKGEEVRIMCVCHGKFLSPAEFVKHAGGKNSESCLEREFLNGSQLEILWIKVVRISSSF 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2300073 2303504 + MELO3C012155.2.1 Cme10g00355 339241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00355 407 MobiDBLite consensus disorder prediction 237 301 - -
Cme10g00355 407 Pfam Tify domain binding domain 354 392 IPR032308 -
Cme10g00355 407 Pfam Ethylene-responsive binding factor-associated repression 50 84 IPR012463 -
Cme10g00355 407 MobiDBLite consensus disorder prediction 217 321 - -
Cme10g00355 407 PANTHER AFP HOMOLOG 2 19 389 IPR031307 GO:0007165
Cme10g00355 407 Pfam Putative nuclear localisation signal 106 228 IPR032310 -
Cme10g00355 407 PANTHER NINJA-FAMILY PROTEIN AFP1 19 389 - -
Cme10g00355 407 Coils Coil 121 141 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01424 Cme-Chr4:20245166 Cme10g00355 Cme-Chr10:2300073 7.69E-14 dispersed
Cme10g00355 Cme-Chr10:2300073 Cme12g01938 Cme-Chr12:25349067 2.75E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00355 - - csv:101220339 674.47