Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00357 ATGTGGAAGAGAGTTCTGTGTTTAATTCCTCACAGGTCGTTTTCCTCTGTACCAGAAACTCCATCTCTTTACTCCTTCCTCCAACCCTCCCTTTTTGCCAAAAAGAGAACTCCATTTTCTCCTTCTCAAGACTCCACCGACCTCCGTCAGGATCCAACTCCTCAAACTTTAACTCCAGACCGTGTTGCCGCTGTAGAAACTGCCCTTCACAAGTCCCTTCTCACTAGCGACACTGATGAGGCATGGAAATCCTTCAAATTGCTCACGAGAAGTTCTATTTTCCCATCTAAGTCTCTTACCAATTCACTTATTGCTCACTTGTCCTCAATTGGGGACGTTCATAATCTGAAAAGGGCCTTTGCTTCTGTGGTGTTTGTTATTGAGAAGAAACCTGAACTGTTGGATTTTGGGTCTGTTAAAGCTTTACTGGCTTCTATGAAATGTGCCAACACTGCTGCCCCTGCTCTTTCTTTGATTAAATGCATGTTTAAGAATCGATGCTTTGTACCTTTTAGTGTCTGGGGCAAAGAACTTGTTGATATTTGCAGACAGAGTGGGAGTTTGATTCCCTTTCTAAGAGTTTTTGAAGAGAACTGTAGGATTGCTTTAGATGAGAGGTTGGATTTTTTGAAACCAGACCTTATTGCTTGTAATGCAGCACTTGAGGGGTGTTGCCATGAACTTGAATCTGTGACAGATGCCGAGAAAGTTGTTGAAACAATGTCACTTTTGTATCTTCGGCCTGATGAGGTGAGTTTTGGTGCTCTTGCTTATTTGTATGCATTGAAGGGTCTTGAACAGAAAATAATCGAGTTAGAGGTCTTGATGGGAAGTTTCGGTTTTACTCGTAAAGATCTCCTTTTTAGTAATTTGGTTAGTGGATACGTTAATGCGAGCAACTTTGCTGCTGTTTCGAAGACTATGCTGCGTAGTTTAAAGGATGAATGTGGATCACATGTGCATTTTGGTGAGAAGACATATTTGGAAATGGTTAAGGGCTTTATCCAAAGTGGAAATCTGAAGGAATTGTCTGCATTAATTATTGACGCTCAGAATTTAGAGTCTTCATCAGCAGTTGATGGATCTATTGGATACGGTATCATTAATGCATGTGTTAATATTGGATGGTTAGATAAGGCACAATACGTTCTGAACGAAATAAATTCCCAGGGAGTTTCTCTGGGCCTTGGAGTCTATATGCCAATCTTGAAAGCTTACCGGACAGAGCGCCGAACAACTGAAGCCACCCAATTAGTCATGGATATTACCAATTCTGGGATTCAGTTGGATGCAGAGAGCTACGATTCTCTAATAGAGGCATCAATGTCGAACCAAGATTTTCAATCAGCTTTTACTTTGTTCAGGAACATGAGGGAAACAAGAAAATCTGACACGAAAGCTAGTTATCTAACTATTATGACTGGCTTAATGGAGAACCATAGGCCTGAGTTGATGGCTGCCTTCTTAGACGAAATTGTCGAAGATCCTCTTGTTGAAGTTGGAACTCATGATTGGAACTCTATTATACATGCCTTTTGCAAAGCTGGAAGACTCGAGGATGCGAGGAGAACATACCGAAGAATGAAATTTCTGCAGTTTGAACCAAACGAGCAGACCTTCTTGTCCCTAATTAATGGCTATGTGTCTGCAGAGAGATATTTCTGTGTTTTAATGCTGTGGAACGAACTTAAGTGGAAGGTTACACCAGATGGAGAGAGTGGAATCAAACTTGACAACAACTTGGTTGATGCATTTCTGTATGCTTTGGTCAAGGGAGGTTTCTTTGACGCTGTGATGCAAGTTGTTGAAAAAACTAAGGATACGAAGATCTTCATTGATAAGTGGAAATATAAGCAAGCATTCATGGAGAATCATAAGAAACTCAAAGTGGCAAAGTTGAGGAGGAGGAACCACAGGAAAATGGAATCTCTAATTGCTTTCAAGAACTGGGCTGGTCTGAGTGCTTGA 1968 41.06 MWKRVLCLIPHRSFSSVPETPSLYSFLQPSLFAKKRTPFSPSQDSTDLRQDPTPQTLTPDRVAAVETALHKSLLTSDTDEAWKSFKLLTRSSIFPSKSLTNSLIAHLSSIGDVHNLKRAFASVVFVIEKKPELLDFGSVKALLASMKCANTAAPALSLIKCMFKNRCFVPFSVWGKELVDICRQSGSLIPFLRVFEENCRIALDERLDFLKPDLIACNAALEGCCHELESVTDAEKVVETMSLLYLRPDEVSFGALAYLYALKGLEQKIIELEVLMGSFGFTRKDLLFSNLVSGYVNASNFAAVSKTMLRSLKDECGSHVHFGEKTYLEMVKGFIQSGNLKELSALIIDAQNLESSSAVDGSIGYGIINACVNIGWLDKAQYVLNEINSQGVSLGLGVYMPILKAYRTERRTTEATQLVMDITNSGIQLDAESYDSLIEASMSNQDFQSAFTLFRNMRETRKSDTKASYLTIMTGLMENHRPELMAAFLDEIVEDPLVEVGTHDWNSIIHAFCKAGRLEDARRTYRRMKFLQFEPNEQTFLSLINGYVSAERYFCVLMLWNELKWKVTPDGESGIKLDNNLVDAFLYALVKGGFFDAVMQVVEKTKDTKIFIDKWKYKQAFMENHKKLKVAKLRRRNHRKMESLIAFKNWAGLSA 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2309126 2311404 - MELO3C012153.2.1 Cme10g00357 339243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00357 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Cme10g00357 655 MobiDBLite consensus disorder prediction 37 56 - -
Cme10g00357 655 TIGRFAM PPR: pentatricopeptide repeat domain 505 537 IPR002885 -
Cme10g00357 655 Gene3D Tetratricopeptide repeat domain 176 319 IPR011990 GO:0005515
Cme10g00357 655 Gene3D Tetratricopeptide repeat domain 463 627 IPR011990 GO:0005515
Cme10g00357 655 Gene3D Tetratricopeptide repeat domain 320 462 IPR011990 GO:0005515
Cme10g00357 655 PANTHER OS01G0788900 PROTEIN 1 654 - -
Cme10g00357 655 Pfam PPR repeat family 505 548 IPR002885 -
Cme10g00357 655 PANTHER BNAC05G43320D PROTEIN 1 654 - -
Cme10g00357 655 Pfam Pentatricopeptide repeat domain 418 469 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00725 Cme-Chr4:8367730 Cme10g00357 Cme-Chr10:2309126 2.04E-31 dispersed
Cme10g00357 Cme-Chr10:2309126 Cme01g00013 Cme-Chr1:141888 3.89E-09 dispersed
Cme10g00357 Cme-Chr10:2309126 Cme12g00737 Cme-Chr12:13440985 1.66E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00357 - - csv:101212045 1229.93