Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00366 ATGGAGAATTCTAAAGAAAACAAGTTTGTTTGTAACTTTTGTCACAAGAGCTTCACGTGTGGGAAGTCATTAGGAGGTCATATCAGAATTCACAAGAATGAGAAATCACCTCGAGTTGCTGGAAGGGAAAGAAGCAGCATGTTGAAGTTTCAAGTTCCGAAAGAGAGGAGAAGAAGCAAGAGAGATTCAGAATCGGAGGTTGGTAATGGGAATTCAGGGTATGGTTTGAGAGAGAATCCTAAAATAACACAGAGGTTTGCTGATTCAGGATTCAGTTCAAGGCAAGAGAAGTTTTGTAGAGAATGTGGACAAGGGTTCCAGTCCTCAGAAGCTTTGAGTTGGCACTTGGCTTGTCACACTGAAAACGAAAGGGAAAACAGAAGGTTTGAATACAATTATGGGATCACACATCATCGATCGGACATTCCTGAGAGAGTACGAGAGGCGGCTATTTGTTTGATGATGATGTCTAAAGCTCCGAGATTTTCAGGATTTGAAGATAACGACTCGGCTGCGGAATCCTCTGATAGTAAATCATCTTCTCGTTATTTTAGGGAAAGTGAAACATCTGCCTCCAACTCTAATGGGGGAGGGCTAGAAATGAAGGAAGTTACTGGTAGGATCAACAAGTTGGAAGTTTATGAATGCGGCGGCGGTGAGAATTCCGACTCTGAAAATTTCAGGAAAGAAGTCTGCAAGAGGGTTAAATTAAAAGTGTCTGTTCATCGGGCTCTTATGGATGAAGAATATGAGAAACCAGATTTCAAATTTGGAGTCAGAGTAGGAAGAGCAAGTGGAGATATTCTAAAGGATTCGATGAAAACTAAGAAAAATGATGATCAAGTGCATGCATCTTCTTACAAGTACGAGCTAAGAAAGAGGTTGAAGAATGGATCATACAGTCCTGATCTCTGGGAGGGATCCAGCAAGAAGATCCCTAGTGAGATCTTTCGTTCTCATGACAGAGAAACCTATACAAGAATGAGCAACGGATGTGAATGGACGCATCAGTCAGGTGAAAACAGCGTAAATACAACTACCAATTCCATTTCCATACCATCTAGGGAGTTAATTGAGTCAAGCAATGGCAAAAACAAGGGTAACCAGGACACTTCTGGAAATGAAGAGAAGAAATTGGGGCCCAAAAGAAAACATAAGTGCCCAATTTGCTTCAAAGCCTTCAAATCAGGCCAGGCTTTGGGGGGTCATAAGAGGTCCCATGTGGTCGGAAGTTTAGAGGATGCTTCTATAGTGACAAGGCAAGAGTCCAATGGGATGGCTGGTCTATTTGATCTAAACGTTCCTGCTCCTATGGAAGAAGAGGAAAATGGGAGATGGGGTTAA 1344 42.11 MENSKENKFVCNFCHKSFTCGKSLGGHIRIHKNEKSPRVAGRERSSMLKFQVPKERRRSKRDSESEVGNGNSGYGLRENPKITQRFADSGFSSRQEKFCRECGQGFQSSEALSWHLACHTENERENRRFEYNYGITHHRSDIPERVREAAICLMMMSKAPRFSGFEDNDSAAESSDSKSSSRYFRESETSASNSNGGGLEMKEVTGRINKLEVYECGGGENSDSENFRKEVCKRVKLKVSVHRALMDEEYEKPDFKFGVRVGRASGDILKDSMKTKKNDDQVHASSYKYELRKRLKNGSYSPDLWEGSSKKIPSEIFRSHDRETYTRMSNGCEWTHQSGENSVNTTTNSISIPSRELIESSNGKNKGNQDTSGNEEKKLGPKRKHKCPICFKAFKSGQALGGHKRSHVVGSLEDASIVTRQESNGMAGLFDLNVPAPMEEEENGRWG 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2353046 2355797 + MELO3C012144.2.1 Cme10g00366 339252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00366 447 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Cme10g00366 447 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 133 442 - -
Cme10g00366 447 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 127 - -
Cme10g00366 447 MobiDBLite consensus disorder prediction 168 199 - -
Cme10g00366 447 MobiDBLite consensus disorder prediction 332 382 - -
Cme10g00366 447 ProSiteProfiles Zinc finger C2H2 type domain profile. 385 407 IPR013087 -
Cme10g00366 447 MobiDBLite consensus disorder prediction 163 201 - -
Cme10g00366 447 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Cme10g00366 447 MobiDBLite consensus disorder prediction 34 79 - -
Cme10g00366 447 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Cme10g00366 447 MobiDBLite consensus disorder prediction 332 369 - -
Cme10g00366 447 SMART c2h2final6 97 119 IPR013087 -
Cme10g00366 447 SMART c2h2final6 385 407 IPR013087 -
Cme10g00366 447 SMART c2h2final6 9 31 IPR013087 -
Cme10g00366 447 Pfam C2H2-type zinc finger 9 31 - -
Cme10g00366 447 Pfam C2H2-type zinc finger 99 119 - -
Cme10g00366 447 Pfam C2H2-type zinc finger 385 407 - -
Cme10g00366 447 SUPERFAMILY beta-beta-alpha zinc fingers 5 36 IPR036236 -
Cme10g00366 447 MobiDBLite consensus disorder prediction 34 65 - -
Cme10g00366 447 ProSitePatterns Zinc finger C2H2 type domain signature. 387 407 IPR013087 -
Cme10g00366 447 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 127 - -
Cme10g00366 447 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 133 442 - -
Cme10g00366 447 Gene3D Classic Zinc Finger 1 70 - -
Cme10g00366 447 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Cme10g00366 447 SUPERFAMILY beta-beta-alpha zinc fingers 98 407 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01089 Cme-Chr7:13662807 Cme10g00366 Cme-Chr10:2353046 8.04E-13 dispersed
Cme10g00366 Cme-Chr10:2353046 Cme06g00030 Cme-Chr6:223315 2.77E-12 dispersed
Cme10g00366 Cme-Chr10:2353046 Cme12g01957 Cme-Chr12:25469040 4.94E-11 wgd
Cme10g00366 Cme-Chr10:2353046 Cme02g01845 Cme-Chr2:25136919 3.51E-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42039 PF13912 zf-C2H2_6 6.20E-09 CL0361 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00366 - - csv:101221515 853.588