Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00366 ATGGAGAATTCTAAAGAAAACAAGTTTGTTTGTAACTTTTGTCACAAGAGCTTCACGTGTGGGAAGTCATTAGGAGGTCATATCAGAATTCACAAGAATGAGAAATCACCTCGAGTTGCTGGAAGGGAAAGAAGCAGCATGTTGAAGTTTCAAGTTCCGAAAGAGAGGAGAAGAAGCAAGAGAGATTCAGAATCGGAGGTTGGTAATGGGAATTCAGGGTATGGTTTGAGAGAGAATCCTAAAATAACACAGAGGTTTGCTGATTCAGGATTCAGTTCAAGGCAAGAGAAGTTTTGTAGAGAATGTGGACAAGGGTTCCAGTCCTCAGAAGCTTTGAGTTGGCACTTGGCTTGTCACACTGAAAACGAAAGGGAAAACAGAAGGTTTGAATACAATTATGGGATCACACATCATCGATCGGACATTCCTGAGAGAGTACGAGAGGCGGCTATTTGTTTGATGATGATGTCTAAAGCTCCGAGATTTTCAGGATTTGAAGATAACGACTCGGCTGCGGAATCCTCTGATAGTAAATCATCTTCTCGTTATTTTAGGGAAAGTGAAACATCTGCCTCCAACTCTAATGGGGGAGGGCTAGAAATGAAGGAAGTTACTGGTAGGATCAACAAGTTGGAAGTTTATGAATGCGGCGGCGGTGAGAATTCCGACTCTGAAAATTTCAGGAAAGAAGTCTGCAAGAGGGTTAAATTAAAAGTGTCTGTTCATCGGGCTCTTATGGATGAAGAATATGAGAAACCAGATTTCAAATTTGGAGTCAGAGTAGGAAGAGCAAGTGGAGATATTCTAAAGGATTCGATGAAAACTAAGAAAAATGATGATCAAGTGCATGCATCTTCTTACAAGTACGAGCTAAGAAAGAGGTTGAAGAATGGATCATACAGTCCTGATCTCTGGGAGGGATCCAGCAAGAAGATCCCTAGTGAGATCTTTCGTTCTCATGACAGAGAAACCTATACAAGAATGAGCAACGGATGTGAATGGACGCATCAGTCAGGTGAAAACAGCGTAAATACAACTACCAATTCCATTTCCATACCATCTAGGGAGTTAATTGAGTCAAGCAATGGCAAAAACAAGGGTAACCAGGACACTTCTGGAAATGAAGAGAAGAAATTGGGGCCCAAAAGAAAACATAAGTGCCCAATTTGCTTCAAAGCCTTCAAATCAGGCCAGGCTTTGGGGGGTCATAAGAGGTCCCATGTGGTCGGAAGTTTAGAGGATGCTTCTATAGTGACAAGGCAAGAGTCCAATGGGATGGCTGGTCTATTTGATCTAAACGTTCCTGCTCCTATGGAAGAAGAGGAAAATGGGAGATGGGGTTAA 1344 42.11 MENSKENKFVCNFCHKSFTCGKSLGGHIRIHKNEKSPRVAGRERSSMLKFQVPKERRRSKRDSESEVGNGNSGYGLRENPKITQRFADSGFSSRQEKFCRECGQGFQSSEALSWHLACHTENERENRRFEYNYGITHHRSDIPERVREAAICLMMMSKAPRFSGFEDNDSAAESSDSKSSSRYFRESETSASNSNGGGLEMKEVTGRINKLEVYECGGGENSDSENFRKEVCKRVKLKVSVHRALMDEEYEKPDFKFGVRVGRASGDILKDSMKTKKNDDQVHASSYKYELRKRLKNGSYSPDLWEGSSKKIPSEIFRSHDRETYTRMSNGCEWTHQSGENSVNTTTNSISIPSRELIESSNGKNKGNQDTSGNEEKKLGPKRKHKCPICFKAFKSGQALGGHKRSHVVGSLEDASIVTRQESNGMAGLFDLNVPAPMEEEENGRWG 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2353046 2355797 + MELO3C012144.2.1 Cme10g00366 339252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00366 447 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Cme10g00366 447 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 133 442 - -
Cme10g00366 447 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 127 - -
Cme10g00366 447 MobiDBLite consensus disorder prediction 168 199 - -
Cme10g00366 447 MobiDBLite consensus disorder prediction 332 382 - -
Cme10g00366 447 ProSiteProfiles Zinc finger C2H2 type domain profile. 385 407 IPR013087 -
Cme10g00366 447 MobiDBLite consensus disorder prediction 163 201 - -
Cme10g00366 447 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Cme10g00366 447 MobiDBLite consensus disorder prediction 34 79 - -
Cme10g00366 447 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Cme10g00366 447 MobiDBLite consensus disorder prediction 332 369 - -
Cme10g00366 447 SMART c2h2final6 97 119 IPR013087 -
Cme10g00366 447 SMART c2h2final6 385 407 IPR013087 -
Cme10g00366 447 SMART c2h2final6 9 31 IPR013087 -
Cme10g00366 447 Pfam C2H2-type zinc finger 9 31 - -
Cme10g00366 447 Pfam C2H2-type zinc finger 99 119 - -
Cme10g00366 447 Pfam C2H2-type zinc finger 385 407 - -
Cme10g00366 447 SUPERFAMILY beta-beta-alpha zinc fingers 5 36 IPR036236 -
Cme10g00366 447 MobiDBLite consensus disorder prediction 34 65 - -
Cme10g00366 447 ProSitePatterns Zinc finger C2H2 type domain signature. 387 407 IPR013087 -
Cme10g00366 447 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 127 - -
Cme10g00366 447 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 133 442 - -
Cme10g00366 447 Gene3D Classic Zinc Finger 1 70 - -
Cme10g00366 447 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Cme10g00366 447 SUPERFAMILY beta-beta-alpha zinc fingers 98 407 IPR036236 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00366 - - - csv:101221515 853.588
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01089 Cme-Chr7:13662807 Cme10g00366 Cme-Chr10:2353046 8.04E-13 dispersed
Cme10g00366 Cme-Chr10:2353046 Cme06g00030 Cme-Chr6:223315 2.77E-12 dispersed
Cme10g00366 Cme-Chr10:2353046 Cme12g01957 Cme-Chr12:25469040 4.94E-11 wgd
Cme10g00366 Cme-Chr10:2353046 Cme02g01845 Cme-Chr2:25136919 3.51E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g59 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g02400 Cam05g2576 Cec05g2610 Cco05g2648 Clacu05g2579 Cmu05g2433 Cre05g2550 . Cone19ag0908 Cone6ag0540 Cone9ag0550 Lsi04g00370 . . Cme10g00366 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012570 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42039 PF13912 zf-C2H2_6 6.20E-09 CL0361 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00366 Cme_Chr10 FPKM 26.398949 22.170183 14.29715 20.389301 21.007322 16.105001 18.310877 13.210823 16.052574 15.971931