Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00367 ATGGCAGCATTTCGATTATCATCCTCCTCCCTTAATTCCAATAATCCACACCTCTCAAAATTCAAATTCCCTTCCACCATCACTTCTTCAGACTCTGGCTTTTGGACCAACTGGACCAGGCTTCTGTTGTTCAGAACTTCACTCCCCAGTTCTACAAGAAGGAAACTGTGGATTAGTAACGTAGCCAAGGATCAACAGAAAGAATTGAAGGAGCCGGTCAATGGAGGAGTTGTAGACGATTTCGATAGCTTTCTTCCGGATTCGGCTTCCGTTGCTGCGAGTATTAAGTATCATTCTGAATTCACGCCTTCTTTCTCTCCCGAAGGCTTTGGGCTTTCTAAGGCGTATTATGCAACTGCTGAAAGTGTTCGTGATATGCTTATCATTAACTGGAATGCTACGTATGAGTACTATGAAAGGATGAATGTGAAACAAGCCTACTATCTGTCGATGGAGTTTTTACAGGGTAGAGCATTGCTAAACGCAATTGGAAATTTGGAACTATCAGGAATTTATGCAGATGCTTTAAGAGTGTTGGGATATAATCTCGAGGAGATAGCACGGCAGGAATCGGATGCTGCACTAGGAAATGGAGGATTAGGGCGGCTTGCTTCCTGCTTTCTGGATTCCCTGGCAACACTAAACTATCCAGCATGGGGATATGGACTCAGATACAAATATGGTTTGTTCAAACAGCTCATTACAAAAAATGGGCAGGAGGAAGTGGCTGAAAATTGGCTAGAGATGGGCAATCCCTGGGAAATTGCAAGAAACGACATCTCCTATCCTGTGAAATTCTATGGTGAAGTTATTTCCGGCGCGGATGGAAGTAAGCAGTGGGTTGGAGGAGAAGATATCACTGCTGTTGCCTACGATGTTCCAATACCAGGTTACAAAACTAAAACCACCATAAACCTCCGTTTGTGGTCCACAAAGGTTGCTCCCGAGCAATTTGATTTGAGTTCTTTCAACGTTGGAAATCATGCCAATGCATATGCGGCCATAAAGAAAGCTGAAAAGATATGTTACGTTCTGTACCCCGGAGACGACTCACTGGAGGGAAAGACTCTTAGATTGAAACAACAATACACATTGTGCTCTGCTTCCCTTCAAGATATTGTCGCACGTTTTGAGAGGAGATCCGGGGAGGCTTTGGACTGGGAAAGTTTTCCAGAAAAGGTTGCTGTGCAGATGAATGATACCCATCCCACACTTTGTATCCCTGAGCTGATAAGAATATTGATGGACGTGAAAGCGTTAACCTGGAAACAAGCTTGGGACATCACTAGTAGAACTGTAGCCTACACAAATCATACAGTTCTGCCGGAGGCGCTTGAAAAATGGGGTTTCGCCCTCATGCAGGAATTACTTCCTCGACATGTTCAGATAATTGAAATGATCGACGAGGAGCTTATCCATTCCATCGTTGCTAAGTATGGCATAAAAGATCATGAGCTATTACAACAAAAGCTGAAGGAAATGAGAGTTCTAGAAAATTTTGAATTACCAGACTCGGTAATGGAACTGCTAGTAAATTCAGTGGAGTCTGCGGTGGCAGTTGATCCCATTGAGGAAGCTGAAATTCTGGATGAGGAATCGTTACCTGGTAAAGAAGAAGAGGAATCTGAAGACGGGAGTATTGCAAAAAAAATAGATGTTTCGTTTAAAGTTGATCCAAAACAGCCAAAGATGATTCGCATGGCTAATTTGTCTGTTGTTGGTGGATATGCTGTAAATGGTGTTGCTGAAATTCACAGTGAAATTGTTAGAACCGAAGTTTTTAGCGACTTCTATGAGTTGTGGCCTGAGAAATTTCAAAACAAAACGAACGGAGTGACACCAAGAAGATGGATTCGTTTTTGCAATCCGGATCTGAGTAAAATCATCACCAAGTGGACTGGAACAAAGCACTGGGTGACAGATACTGAAAAACTAGCAATACTCCGAAAGTTCGCTGATAACGAGGATCTTCAGTCCATGTGGAAGGAAGCTAAAAGAATAAACAAATTGAAAGTTGTCTCTTTTCTTAAAGAAAAAACTGGCTATTTAGTCAGCCCTGATGCAATGTTTGACGTACAGGTAAAACGCATCCATGAATACAAGAGACAGTTGTTGAACATCCTGGGGATTGTCTATCGTTATAAACAAATGAAAGAAATGACTTTGGAGGAAAGAGAAGCAAAGTTTGTTCCTCGAGTCTGTATATTTGGGGGGAAAGCATTTGCAACATACGTCCAGGCGAAAAGGATTGTGAAATTCATTGCTGATGTTGGAGCTACCGTCAATAACGATCCTGATATAGGAGACCTTTTAAAGGTAGTGTTTGTTCCAGATTACAATGTGAGTGTGGCAGAAGTGCTCATTCCTGGCAGTGACCTTTCCCAGCATATCAGCACGGCTGGAATGGAGGCCAGTGGTACCAGCAACATGAAGTTTGCAATGAATGGCTGTGTACTAATTGGAACATTAGACGGGGCAAATGTGGAGATAAGAGAAGAGGTTGGAGAAGACAACTTTTTCCTCTTTGGTGCAAGGGCTCATGAAATTGCTACCCTAAGAAAAGAAAGAGCTCAAGGCAAGTTTGTTCCTGACCCACGGTTTGAGGAAGTGAAGGCTTTCGTCAGAAGTGGGGTTTTTGGTTCCAATAATTATGAAGAACTCATGGGCTCTTTGGAGGGAAATGAAGGTTATGGTCGGGCAGACTATTTCCTCGTTGGCAAGGACTTCCCTAGTTACATAGAGTGCCAAGACAGGGTTGATGAGGCCTATCGAGATCAAAAGAGATGGACCAAGATGTCGATCTTAAACACGGCTGGTTCATACAAGTTCAGCAGCGATAGAACCATTCATGAGTATGCAAGGGACATATGGAAGATTTCTCCACTATTGCTATCTTAA 2898 42.75 MAAFRLSSSSLNSNNPHLSKFKFPSTITSSDSGFWTNWTRLLLFRTSLPSSTRRKLWISNVAKDQQKELKEPVNGGVVDDFDSFLPDSASVAASIKYHSEFTPSFSPEGFGLSKAYYATAESVRDMLIINWNATYEYYERMNVKQAYYLSMEFLQGRALLNAIGNLELSGIYADALRVLGYNLEEIARQESDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQLITKNGQEEVAENWLEMGNPWEIARNDISYPVKFYGEVISGADGSKQWVGGEDITAVAYDVPIPGYKTKTTINLRLWSTKVAPEQFDLSSFNVGNHANAYAAIKKAEKICYVLYPGDDSLEGKTLRLKQQYTLCSASLQDIVARFERRSGEALDWESFPEKVAVQMNDTHPTLCIPELIRILMDVKALTWKQAWDITSRTVAYTNHTVLPEALEKWGFALMQELLPRHVQIIEMIDEELIHSIVAKYGIKDHELLQQKLKEMRVLENFELPDSVMELLVNSVESAVAVDPIEEAEILDEESLPGKEEEESEDGSIAKKIDVSFKVDPKQPKMIRMANLSVVGGYAVNGVAEIHSEIVRTEVFSDFYELWPEKFQNKTNGVTPRRWIRFCNPDLSKIITKWTGTKHWVTDTEKLAILRKFADNEDLQSMWKEAKRINKLKVVSFLKEKTGYLVSPDAMFDVQVKRIHEYKRQLLNILGIVYRYKQMKEMTLEEREAKFVPRVCIFGGKAFATYVQAKRIVKFIADVGATVNNDPDIGDLLKVVFVPDYNVSVAEVLIPGSDLSQHISTAGMEASGTSNMKFAMNGCVLIGTLDGANVEIREEVGEDNFFLFGARAHEIATLRKERAQGKFVPDPRFEEVKAFVRSGVFGSNNYEELMGSLEGNEGYGRADYFLVGKDFPSYIECQDRVDEAYRDQKRWTKMSILNTAGSYKFSSDRTIHEYARDIWKISPLLLS 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2356012 2362148 - MELO3C012142.2.1 Cme10g00367 339253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00367 965 PANTHER GLYCOGEN PHOSPHORYLASE 32 964 IPR000811 GO:0005975|GO:0008184
Cme10g00367 965 ProSitePatterns Phosphorylase pyridoxal-phosphate attachment site. 803 815 IPR035090 -
Cme10g00367 965 Gene3D Glycogen Phosphorylase B; 81 614 - -
Cme10g00367 965 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 87 961 - -
Cme10g00367 965 PANTHER ALPHA-1,4 GLUCAN PHOSPHORYLASE L-2 ISOZYME, CHLOROPLASTIC/AMYLOPLASTIC 32 964 - -
Cme10g00367 965 TIGRFAM P_ylase: glycogen/starch/alpha-glucan phosphorylases 555 959 IPR011833 GO:0004645|GO:0005975|GO:0030170
Cme10g00367 965 PIRSF Glucan_phosphorylase_GlgP 106 965 IPR000811 GO:0005975|GO:0008184
Cme10g00367 965 Gene3D Glycogen Phosphorylase B; 615 944 - -
Cme10g00367 965 CDD GT35_Glycogen_Phosphorylase 94 959 - -
Cme10g00367 965 Pfam Carbohydrate phosphorylase 178 959 IPR000811 GO:0005975|GO:0008184
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01090 Cme-Chr7:13698545 Cme10g00367 Cme-Chr10:2356012 0 dispersed
Cme10g00367 Cme-Chr10:2356012 Cme11g01354 Cme-Chr11:20368612 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00367 K00688 - csv:101221746 1846.25