Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00377 ATGGGAACAAAGGTGCAGTATGAAAGTTATTTGCCAGGTTATCATTCAATGAGAGATCTAAATGAAGATTCTCATGGTTGTAGCTGGCCTTTATATTACAGTGAAAAATCATGTCAGAGTGGTCAATACTATAATGGAATTCTGCCAAGAGCTACCTCTGATGCATATCTAGGTTGTGATAGAGATGCTGTGAAGAGGACAATGCTCGAGCATGAAGCCATATTCAAGAACCAGGTTCGAGAGCTGCATCGGTTATATATAAAACAGAGAGAGTTAATGAATGATATTAAAAGATCAGAACAAAGACATCCAATACCGGTGGACATATCATTCTCATCTAGTCCTTTAGCATCTCAAAGTACTCCTGATGGTGCAAGGAAATGGCATCTCCCGAACTTTCCTCTTGCAATTTCTTCCAGTGGACCATCTGTACCTGGCGTTGAAGATGTAAAATCATCTTTAAGTTCTTTGAAAGAAAACAATAGAAGTGATGGTCTCTTACCATCCCAAAATGGAACTAGTTCGAAAGACTGTGAGGTACTAGAATCTAGACACTCAAATTCTAGGAGGAAAACTTTTGATCTTCAACTTCCAGCAGATGAGTACATTGATAGTGAAGAGGGGGAGGTATTTCACGATGAAAAAGTACCTCCTGCTCTGGGTTGCCATTCAAATGGCAGCAAGAAATTTGAGACTCAGAGTTGTGTGACAGCAAATTTGAATTTGAATCTCGAAGAAAAAAGTGGTGGTCAAAGTGCTGCTTTGAGATCCGACTCATGTTTATGGAACAGATATGGTTTGGCTGACTTAAATGAGCCTGTTCAGGTTGAAGAGGCAAATGGGTCCAATTTTTTTGATCTTCCTAGTGCTCGTGACTCCAGCAATGGGGAGACTCAAGGTCCCATTGTATCATCTGCAAAGCAAGAAAATTTTCTGAGCTCCAGTAATGAAGGTGGACATGCAACGAATAGGAATTCGTATATTGAGAATGGAAATAGAAGAGAGGCATTTCCTAACATCTTTGAAGCAGGACGTAGTAAGGAAAGTGAGAAATCTTTCACTCGTGGTCAGATGGAAAAATTCCATTTATCTTCTAATCCTTTGCAAGTTCCACTCAACAAGTATCATGAACTTCCAGTTTTCTATCTCAATGATAAAAGCAAGGTTCAACAAGATTTGGACAGGCCAGTTAGTGATTTGCAATTATTCAAAAGAAGTTTTGAAATGTCCAATGCTGGGGATCCTGGTTATGTTTTAGCTTCTCAGACATCTCGTACATATCAAATTGCTCCTTCTTTGGATGTTGGCAAGTCATGGGCTCACTCCAGTTCATCTTGGGAAAAGTCAAATGGCTCCCAGAAGACAACATCGGGTCATACACAGCCGTGCTTCAATTCGTCTGCTGCCGTTCACAAGAGTTTTCCTTCATCAACTCTGAACAATGGAATTTTTGGAGATAGATGGCATTTGAGTAGTGACTCTAGATCAAACCCTGGGTCTGGTTGCGAAAATCCCAACCAGAATGGATTCTATATCGGGTCTACGTCTGGTTCCAACGGTGTTCTCTCCTCTACTATAAGGCATGATCCTGGGGCAAACTATTACAAGGGCTCTGGTTGTGTCAGCACGAATTCTCCAAAAGATATTAACTTGAATGTAGTGCTTCAGAAAAGTTTATCAAATGAGTCAGGTCAACAACCAAACTACCGGACTAGAGAGTCAGAACAAAACAATGAGGACCATCATAATGTATTACCATGGTCAAGGGCTGTGCCTGCTGCTAGTAAGAATGAAACAATCAATTCAAGAAGATTCTCTGTGACTGGAGAGCTTAATTTTGCGCTCTCTCCGACAAAACAATTTTCTGATAGAAATGAAACTGAAAATGGCAGTAAAGTTGTATGTTATCCGAACATTGAGTCTAATTCACATTGTAGTAACAATGAGCCCAGAATGTCGGAACAGGGTGAATGCCAGAGTAACCGAAAACTTCTTGGGTTTCCCATTTTTGAAGGGCCACGCATTTCTAAGAATGAGTCGTTTTCTCTTACATCCCCATCAGCATCTCTTCCTAATCCATCTGAGAATGGAATGGAAGATAACAGGAAAACTAGAGTACTTGATATCAATTTGCCTTGTGATCCTTCAGTTTTTGAGTCGGACAACGCTACGAACGGAGCTCTGACTGTAGAGAATGGAAAGGACACAAAGATCTCTACTGTGAGAGTTGATATTGATTTGAACTCATGTGTCAGTGATGAAGAACCATCTATGAGACCCCTACCTTTGCCTTCTTCAAGTGGCAAGGAAAGGGTCATGGTAGAGATAGATTTAGAAGCCCCGGCAATGCCCGAGACTGAGGACAACATAATTGTAGAAGAAGAATCTTTAGTAAAACAGCATGAACAGCAACCACAATCCCTTCAGCACAAGGCTGTTGATATTCAGGATGATCTTATGTCTTTAGCAGCAGAGGCAATACTTGCCATCTCTTCTTGTGGTCATTCCTGTCTTTTGGATGATAGTGTTGTTAGCAATGGCTTGGAAGATTCTTCAAGCGACCCCCTAAATTGGTTTGCCGAGATAGTTTCCACACATGGAGATGATGTACAAACCAAGTCTGACACTGTATTGAGATCCAAAGAAGGCAAGGATGCTGAGGAATCCTCTTTGAGAGGGGTTGATTACTTCGAATACATGACTTTGAGGCAGGCGGAGGTTGATGAAGAACACTACATGCCTAAGCCTCTGGTTCCAGAAAATATGGAAATTGAAGATACCGGAACCAATTTGTTGCAAAATCGGCCCCGAAAGGGCCAGACGAGGAGAGGTCGGCAGAGAAGGGACTTCCAAAAGGACATCCTTCCAGGCCTGTCTTCTCTATCAAGGCATGAGGTTACGGAAGATCTTCAGACATTTGGTGGCCTAATGCGAGCAACAGGCCACTCTTGGCATTCCGGAGTTACGAGGAGGAACTCTACTAGAAACGGTTGTGGTAGGGGAAGACGAAGATCAGTAACGAGTCCCCCGCCCCCTGTGCAATCGGCTTGTAATCAGCTGATACAGCAACTAAGTAACATTGAAATGGGTCTAGAAGATGGAAGCCTGACTGGTTGGGGCAAGACAACTAGAAGGCCCCGTCGGCAGAGATGCCCGGCCGGTAACCCTCCGGCTGTTCCTTTAACTTAA 3189 42.52 MGTKVQYESYLPGYHSMRDLNEDSHGCSWPLYYSEKSCQSGQYYNGILPRATSDAYLGCDRDAVKRTMLEHEAIFKNQVRELHRLYIKQRELMNDIKRSEQRHPIPVDISFSSSPLASQSTPDGARKWHLPNFPLAISSSGPSVPGVEDVKSSLSSLKENNRSDGLLPSQNGTSSKDCEVLESRHSNSRRKTFDLQLPADEYIDSEEGEVFHDEKVPPALGCHSNGSKKFETQSCVTANLNLNLEEKSGGQSAALRSDSCLWNRYGLADLNEPVQVEEANGSNFFDLPSARDSSNGETQGPIVSSAKQENFLSSSNEGGHATNRNSYIENGNRREAFPNIFEAGRSKESEKSFTRGQMEKFHLSSNPLQVPLNKYHELPVFYLNDKSKVQQDLDRPVSDLQLFKRSFEMSNAGDPGYVLASQTSRTYQIAPSLDVGKSWAHSSSSWEKSNGSQKTTSGHTQPCFNSSAAVHKSFPSSTLNNGIFGDRWHLSSDSRSNPGSGCENPNQNGFYIGSTSGSNGVLSSTIRHDPGANYYKGSGCVSTNSPKDINLNVVLQKSLSNESGQQPNYRTRESEQNNEDHHNVLPWSRAVPAASKNETINSRRFSVTGELNFALSPTKQFSDRNETENGSKVVCYPNIESNSHCSNNEPRMSEQGECQSNRKLLGFPIFEGPRISKNESFSLTSPSASLPNPSENGMEDNRKTRVLDINLPCDPSVFESDNATNGALTVENGKDTKISTVRVDIDLNSCVSDEEPSMRPLPLPSSSGKERVMVEIDLEAPAMPETEDNIIVEEESLVKQHEQQPQSLQHKAVDIQDDLMSLAAEAILAISSCGHSCLLDDSVVSNGLEDSSSDPLNWFAEIVSTHGDDVQTKSDTVLRSKEGKDAEESSLRGVDYFEYMTLRQAEVDEEHYMPKPLVPENMEIEDTGTNLLQNRPRKGQTRRGRQRRDFQKDILPGLSSLSRHEVTEDLQTFGGLMRATGHSWHSGVTRRNSTRNGCGRGRRRSVTSPPPPVQSACNQLIQQLSNIEMGLEDGSLTGWGKTTRRPRRQRCPAGNPPAVPLT 1062
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2411609 2418546 - MELO3C012134.2.1 Cme10g00377 339263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00377 1062 MobiDBLite consensus disorder prediction 1032 1062 - -
Cme10g00377 1062 MobiDBLite consensus disorder prediction 985 1001 - -
Cme10g00377 1062 MobiDBLite consensus disorder prediction 983 1015 - -
Cme10g00377 1062 MobiDBLite consensus disorder prediction 283 302 - -
Cme10g00377 1062 MobiDBLite consensus disorder prediction 444 464 - -
Cme10g00377 1062 MobiDBLite consensus disorder prediction 145 177 - -
Cme10g00377 1062 MobiDBLite consensus disorder prediction 558 580 - -
Cme10g00377 1062 MobiDBLite consensus disorder prediction 286 302 - -
Cme10g00377 1062 MobiDBLite consensus disorder prediction 678 697 - -
Cme10g00377 1062 MobiDBLite consensus disorder prediction 312 331 - -
Cme10g00377 1062 PANTHER TRANSCRIPTION FACTOR, PUTATIVE (DUF863)-RELATED 1 1061 - -
Cme10g00377 1062 MobiDBLite consensus disorder prediction 558 572 - -
Cme10g00377 1062 Pfam Plant protein of unknown function (DUF863) 141 1052 IPR008581 -
Cme10g00377 1062 MobiDBLite consensus disorder prediction 139 183 - -
Cme10g00377 1062 PANTHER - 1 1061 - -
Cme10g00377 1062 MobiDBLite consensus disorder prediction 490 513 - -
Cme10g00377 1062 MobiDBLite consensus disorder prediction 678 699 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00377 - - - csv:105435576 1964.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01435 Cme-Chr3:23717753 Cme10g00377 Cme-Chr10:2411609 0 dispersed
Cme10g00377 Cme-Chr10:2411609 Cme09g01642 Cme-Chr9:21154004 7.66E-08 dispersed
Cme02g01584 Cme-Chr2:22905987 Cme10g00377 Cme-Chr10:2411609 4.31E-08 transposed
Cme10g00377 Cme-Chr10:2411609 Cme12g01967 Cme-Chr12:25521883 5.24E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g80 Blo01g00444 . Bda01g02136 . . Bpe10g00891 . Bma15g00139 Cmo04g01769 Cmo18g01141 . Cma18g01120 . Car18g01032 Sed06g1491 Cpe09g00208 Cpe01g01494 Bhi07g01518 Tan04g1031 Cmetu10g0795 Lac13g0357 Hepe10g1779 . . Cla05g02409 Cam05g2586 Cec05g2618 Cco05g2658 Clacu05g2588 Cmu05g2442 Cre05g2559 . . Cone6ag0549 Cone9ag0559 Lsi04g00380 Csa05g02495 Chy10g01043 Cme10g00377 . Blo11g00790 . . . Bpe02g02325 Bma01g00114 . . . . Cma04g01688 . Car04g01725 . . Cpe07g00079 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001421 1 6 2 3 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 8 3 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00377 Cme_Chr10 FPKM 204.673996 194.44487 138.233032 128.2444 122.404045 116.967125 114.42971 49.503372 64.029709 64.2668