Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00380 ATGTCGGACGAGGAGCACCACTTCGAGTCCAAGGCCGACGCCGGAGCTTCCAAGACTTATCCCCAGCAGGCTGGAACCATCCGCAAAAATGGATACATTGTCATCAAGGGCAGACCTTGCAAGGTTGTTGAGGTTTCAACCTCAAAGACTGGAAAGCACGGACATGCTAAATGTCACTTTGTTGGCATTGACATTTTCACTGCTAAAAAGCTTGAAGATATCGTCCCCTCTTCACACAATTGTGATATTAGCCTGCTGACAGACAGTGGTAGCACCAAGGATGACCTTAGGCTTCCAACCGATGATAATCTGCTGTCCCAGATCAAGGATGGATTTGCCGAGGGGAAGGATCTGATTGTGACTGTCATGTCTTCAATGGGAGAGGAGCAAATCTGCGCTCTCAAGGACATAGGCCCAAAATAG 423 48.46 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDISLLTDSGSTKDDLRLPTDDNLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2439524 2442273 + MELO3C012131.2.1 Cme10g00380 339266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00380 140 PIRSF Transl_init_eIF5A 82 138 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cme10g00380 140 PIRSF Transl_init_eIF5A 1 84 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cme10g00380 140 PANTHER BNAA07G09420D PROTEIN 1 137 - -
Cme10g00380 140 MobiDBLite consensus disorder prediction 1 21 - -
Cme10g00380 140 SUPERFAMILY Translation proteins SH3-like domain 15 85 IPR008991 -
Cme10g00380 140 SMART eIF_5a_2 66 135 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cme10g00380 140 Gene3D - 1 79 IPR014722 -
Cme10g00380 140 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 137 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cme10g00380 140 Gene3D - 80 137 IPR012340 -
Cme10g00380 140 SUPERFAMILY Nucleic acid-binding proteins 77 137 IPR012340 -
Cme10g00380 140 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 83 135 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cme10g00380 140 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cme10g00380 140 TIGRFAM eIF_5A: translation elongation factor IF5A 17 86 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00120 Cme-Chr7:806737 Cme10g00380 Cme-Chr10:2439524 1.78E-92 dispersed
Cme10g00380 Cme-Chr10:2439524 Cme03g01578 Cme-Chr3:24781554 1.94E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00380 K03263 K02180 csv:101214693 268.085