Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00381 ATGGCGTCGCCGGTGGCTGCCGTTCCTCCGTCGACGTCTGAGTTTAAGTCTTCTCCCGGTCTGCTTGATTCTCCGGGGCTTTTTTCGCCTGGTCAAGGACCTTTCGGAATGACGCATCAGCAGGCTTTGGCTCAGGTTACTATGCAGGCTGTAGAAGCCTATTCTCATAATCAAATGCAAGCCGCGTCCTTTTCTTCATCTGTAGCACCTTCTGCATCCTCCTTGCAGCTTTTGACATCCTTACCGGGAGAGAAGACTAAAGATCAGCTGATGCAACTTCCATTCCATAACTCTTCAGTTGCATCCAAGGAGCCATCTGATAACTCTCAATCAGAGCAGAGATTGCAATTGTCTTCGTGCAATGTTGATAAACCTGCTGATGACGGATACAATTGGAGAAAATATGGACAGAAACAAGTGAAGGGCAGTGAATTTCCTCGAAGCTACTATAAGTGCACGCACCCGAATTGTCCTGTCAAGAAAAAGGTTGAACGATCTTTGGAAGGACAAGTTACTGAAATTATCTACAAGGGCGAGCACAACCATAAACGGCCTCAACCAAATAAGCGATCAAAGGATGTCGGAAATTCTAATGGATATTCGATTGTTCATGGAAATCTTGAGCTATCTTCTCAAGTTCGGAGTGGATATTTGAATAAATTGGACGAGGAGACATCTATCTCTTCCATCAGAAAGAAGGATCAAGAATCAAGTCGTGTCACAAACGATCAGTTCTCAGGCAATAGTGATGGTGAGGGAGGGAGTGAGATAGAAACAGGAGTGAACCGAAAAGATGAAGACGAACCTGATGCCAAGAGACGGAATACTGAGGTTAGAAATTCTGAGCCAGCATCTTCTCATAGAACTCTAACAGAATCCAGAATCATTGTGCAGACTACAAGTGAAGTTGATCTATTGGACGATGGTTACAGGTGGCGTAAGTATGGGCAGAAAATTGTTAAAGGAAACCCTTACCCTAGGAGCTATTATAAATGCACAACTCCAGGATGCAATGTTCGTAAACATGTTGAGAGAGCTTCAACTGACCCGAAAGCTGTCATCACGACATACGAAGGTAAACACAATCATGATGTTCCACTTGGTAAAACCAGCAGCCACAGTTCAGTCAGCGGTAACATTTCTCAGCTAAAATCACAAAATATAGTTACTGAGAAAAAAAATTCAAGTAACAACACTGATCGTGGGAACTCCCATCAACAGCCCACCGGACTTTTACGGTTAAAGGAAGAACAAATAACATAG 1263 43.63 MASPVAAVPPSTSEFKSSPGLLDSPGLFSPGQGPFGMTHQQALAQVTMQAVEAYSHNQMQAASFSSSVAPSASSLQLLTSLPGEKTKDQLMQLPFHNSSVASKEPSDNSQSEQRLQLSSCNVDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSLEGQVTEIIYKGEHNHKRPQPNKRSKDVGNSNGYSIVHGNLELSSQVRSGYLNKLDEETSISSIRKKDQESSRVTNDQFSGNSDGEGGSEIETGVNRKDEDEPDAKRRNTEVRNSEPASSHRTLTESRIIVQTTSEVDLLDDGYRWRKYGQKIVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPLGKTSSHSSVSGNISQLKSQNIVTEKKNSSNNTDRGNSHQQPTGLLRLKEEQIT 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2444550 2448025 + MELO3C012130.2.1 Cme10g00381 339267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00381 420 SUPERFAMILY WRKY DNA-binding domain 124 185 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme10g00381 420 MobiDBLite consensus disorder prediction 177 199 - -
Cme10g00381 420 MobiDBLite consensus disorder prediction 368 413 - -
Cme10g00381 420 MobiDBLite consensus disorder prediction 240 255 - -
Cme10g00381 420 ProSiteProfiles WRKY domain profile. 301 366 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme10g00381 420 MobiDBLite consensus disorder prediction 359 420 - -
Cme10g00381 420 MobiDBLite consensus disorder prediction 99 120 - -
Cme10g00381 420 SMART WRKY_cls 306 365 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme10g00381 420 SMART WRKY_cls 126 184 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme10g00381 420 MobiDBLite consensus disorder prediction 1 36 - -
Cme10g00381 420 MobiDBLite consensus disorder prediction 227 292 - -
Cme10g00381 420 Gene3D WRKY domain 291 367 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme10g00381 420 Gene3D WRKY domain 111 186 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme10g00381 420 MobiDBLite consensus disorder prediction 99 123 - -
Cme10g00381 420 SUPERFAMILY WRKY DNA-binding domain 298 366 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme10g00381 420 MobiDBLite consensus disorder prediction 257 281 - -
Cme10g00381 420 ProSiteProfiles WRKY domain profile. 127 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme10g00381 420 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 17 419 - -
Cme10g00381 420 Pfam WRKY DNA -binding domain 127 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme10g00381 420 Pfam WRKY DNA -binding domain 307 364 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme10g00381 420 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 17 419 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02787 Cme-Chr6:35108962 Cme10g00381 Cme-Chr10:2444550 2.56E-15 dispersed
Cme10g00381 Cme-Chr10:2444550 Cme11g01709 Cme-Chr11:25170183 3.18E-15 dispersed
Cme01g00537 Cme-Chr1:4022838 Cme10g00381 Cme-Chr10:2444550 2.74E-16 transposed
Cme04g02569 Cme-Chr4:31781630 Cme10g00381 Cme-Chr10:2444550 1.67E-67 transposed
Cme04g02759 Cme-Chr4:32820268 Cme10g00381 Cme-Chr10:2444550 1.04E-83 transposed
Cme06g02711 Cme-Chr6:34310802 Cme10g00381 Cme-Chr10:2444550 2.10E-84 transposed
Cme12g00015 Cme-Chr12:206999 Cme10g00381 Cme-Chr10:2444550 7.65E-16 transposed
Cme10g00381 Cme-Chr10:2444550 Cme09g00236 Cme-Chr9:1797171 3.38E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42040 PF03106 WRKY 6.70E-26 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00381 - - cmo:103489160 837.025