Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00387 ATGAGCTTTGAACATTCCGGAACTCCCGTCGGTTCACCGTCGCCGGGGAGCACCGGAGGCAAGGGAAATTTATCGTCGTCATCGGCGTCCGGAACGAGTAAGGAGAAGCAAAAGGAGAAAGCAAGAGTGAGTAGGACGTCACTCATATTGTGGCACGCTCATCAGAATGATTCAGTTGCTGTTCGTAAGCTTCTGGAGGAGGATCAATCCCTTGTTCATGCTAGAGATTACGACAGCCGCACTCCTCTTCATGTTGCTTCGCTTCATGGTTGGATCGATGTTGCCAAGTGTTTGATTGAACACGGTGCTGATGTTAATGCCCAAGATCGCTGGAAGAACACTCCACTAGCTGATGCGGAAGGAGCTAAAAAGCATGGCATGATTGAGCTGTTAAAATCGTATGGTGGCCTTTCTTATGGCCAAAATGGAAGCCATTTTGAACCAAAGCCTGTTCCTCCTCCTCTGCCAAATAAATGTGACTGGGAAATTGATCCTTCTGAACTGGATTTTTCAAACTCAGCTATCATTGGCAAGGGGTCCTTCGGGGAAATTTTGAAGGCCTATTGGCGCGGAACCCCCGTAGCTGTCAAACGTATTCTTCCATCACTTTCAGACGATAGACTTGTGATTCAGGACTTTCGACATGAGGTTAATCTGTTGGTGAAGCTACGCCACCCTAACATTGTCCAATTTCTTGGAGCTGTCACTGAGAAGAAACCACTTATGTTAATCACTGAATACTTGAGAGGGGGTGATCTTCACCAGTACCTCAAGGACAAAGGTTCGCTCAGTCCTGCAACAGCCATCAATTTTGCACTGGACATTGCCCGGGGAATGGCTTATCTCCACAACGAACCAAATGTTATAATTCACCGTGATCTAAAACCAAGGAACGTTCTTTTAGTGAATTCTGGTGCGGACCATCTAAAAGTTGGTGATTTTGGTCTAAGCAAGCTCATCAAGGTTCAGAATTCACATGATGTTTATAAAATGACTGGCGAGACCGGGAGTTACCGTTATATGGCTCCTGAAGTTTTTAAGCACAGAAAATATGATAAGAAGGTGGATGTTTTTTCTTTTGCAATGATATTATACGAGATGCTTGAGGGAGACCCTCCACTGGCAAATTATGAGCCATATGAAGCTGCCAAGTATGTGGCTGAAGGTCACAGACCGATCTTCCGTGCGAAAGGATACCTTCCTGTTCTGAGAGAGTTGACAGAAGAATGTTGGGCATCCGATATGAACAAGAGACCTTCTTTCCTGGAAATTCTCAAAAGACTTGAAAAGATCAAGGAAAGTCTACCAACTGATCATCACTGGAATTTGTTTAATGCATAA 1341 44.82 MSFEHSGTPVGSPSPGSTGGKGNLSSSSASGTSKEKQKEKARVSRTSLILWHAHQNDSVAVRKLLEEDQSLVHARDYDSRTPLHVASLHGWIDVAKCLIEHGADVNAQDRWKNTPLADAEGAKKHGMIELLKSYGGLSYGQNGSHFEPKPVPPPLPNKCDWEIDPSELDFSNSAIIGKGSFGEILKAYWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTEKKPLMLITEYLRGGDLHQYLKDKGSLSPATAINFALDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSGADHLKVGDFGLSKLIKVQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGDPPLANYEPYEAAKYVAEGHRPIFRAKGYLPVLRELTEECWASDMNKRPSFLEILKRLEKIKESLPTDHHWNLFNA 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2488737 2494415 + MELO3C012125.2.1 Cme10g00387 339273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00387 446 CDD STKc_MAP3K-like 176 428 - -
Cme10g00387 446 SMART ANK_2a 78 107 IPR002110 GO:0005515
Cme10g00387 446 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 28 438 - -
Cme10g00387 446 Pfam Protein tyrosine and serine/threonine kinase 174 428 IPR001245 GO:0004672|GO:0006468
Cme10g00387 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672|GO:0006468
Cme10g00387 446 MobiDBLite consensus disorder prediction 1 32 - -
Cme10g00387 446 ProSiteProfiles Protein kinase domain profile. 170 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00387 446 Pfam Ankyrin repeats (3 copies) 46 109 IPR002110 GO:0005515
Cme10g00387 446 SUPERFAMILY Protein kinase-like (PK-like) 168 441 IPR011009 -
Cme10g00387 446 Gene3D Phosphorylase Kinase; domain 1 155 249 - -
Cme10g00387 446 SMART serkin_6 170 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00387 446 PANTHER SERINE/THREONINE-PROTEIN KINASE STY8-LIKE 28 438 - -
Cme10g00387 446 ProSitePatterns Protein kinases ATP-binding region signature. 176 197 IPR017441 GO:0005524
Cme10g00387 446 MobiDBLite consensus disorder prediction 1 41 - -
Cme10g00387 446 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Cme10g00387 446 Gene3D - 21 144 IPR036770 -
Cme10g00387 446 SUPERFAMILY Ankyrin repeat 50 136 IPR036770 -
Cme10g00387 446 ProSiteProfiles Ankyrin repeat region circular profile. 78 110 - -
Cme10g00387 446 Gene3D Transferase(Phosphotransferase) domain 1 250 442 - -
Cme10g00387 446 PIRSF ILK 6 446 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00191 Cme-Chr8:1316654 Cme10g00387 Cme-Chr10:2488737 1.60E-103 dispersed
Cme10g00387 Cme-Chr10:2488737 Cme12g01253 Cme-Chr12:20660326 2.20E-103 dispersed
Cme12g00374 Cme-Chr12:5222317 Cme10g00387 Cme-Chr10:2488737 1.63E-11 dispersed
Cme10g00387 Cme-Chr10:2488737 Cme11g01546 Cme-Chr11:22963155 3.08E-106 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65193 PF07714 PK_Tyr_Ser-Thr 3.00E-63 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00387 - - csv:101215575 862.448