Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00389 TCTTTGGAATCTTTTCTCTATAAATACTCCACCTTCCTCATACTACACCACACTATTCTCATTCTCATAAATATATCATCAAACTACAAATTAAAAACATCAGCTGTTATTATATATCTCTGCTGCTGGATCGATCAGCGTACTCTCTCTCTCTTTTTATGCAAATACGAAAGTGTTTCTTCTTCACCAAAATCATCATCAAATATGAAGTTTGGCAAACAATTTACTGCTCAAATGGTTCCGGAATGGCAACAAGCTTACATGGATTATGATTTTCTCAAATCCCTCTTGAAGCAAATTGACACTTTCAACAAAACCCACGCTAGAAACCAGCCCTCCAGTCATTCCGGCCAGCTCCGGCGAACCCTCACTCTCTACAGGGCTTTTAGTGGGTTAACGCTCCGTCACAGTCATAGCCATGGTCACGGTCATGGCCATGGCCATGGCCATAACAGCTACCCAGCAAGCCCTGCAGGTTCACCTCAGGATGGGGTGGAGGAGCAGGCGATATTGGTGAATGCGGTGAACCGGGACGGGACGAAGAAGTATCGGACGACGTTTTTGATGGCGGACGAGGAAGGAGGAGAGTATGAGTTGGTGTATTTCAGGTCGTTGGATAGGGAATTCAATAAAGTGGACAAGTTCTACAAAGCAAAAGTAGAGGAAGTTGTGAAGGAGGCAAGTGTTTTGAATAAGCAAATGAATGCTTTGATTGCTTTCAGAATAAAAGTGGAGAATCCAGAAGGTGTTTGGGATTTCTCCGGTGACCGGCGGGCGGAGGAGATGACAAGGCTGGCCACTGATATTGCTGTTTCAACTGCTGCTTTATCATCTTCTACTCCTTCTGGGGTCAGAGCTAGCAGAAGAGTTCATATAGCGATGGATTCCATAGAAGAAGGGTCGAGCCACAATGAGCGTAGTAGTCATAAACCGAACAATGAATCATCAAAAGACGAGGATGAAGATGAAAAAGAAGATCAAAAGAAGAAATCAAAGGGTGGTGAAGATAATAGTGAAGGGAAATCAAGAAAAATGATGGCAAATAGACCACCTCCACTTGAACTTCTTGATCGTGTAACAATGAACACAACTACAGAAACCCCAAGATCCACCATTAAAGGCCTTCTCAATTTCCCCAAAAATTCTGAACTTCAGTTCAACAAAGATAATCTCAACAAAATTGAGAACCAACTCAAGAAGGCCTTTGTTGTGTTTTACCACAAACTAAGACTACTTAAGAGCTTCAGCTTCTTGAATACTTTGGCATTTTCAAAGATAATGAAGAAATATGATAAGATTACATCAAGAGATGCTGGAAAGTCATATATGAAGATGGTGGATAGCTCTTATCTTGGGAGCTCTGACGAGGTTTCTAAGTTAATGGAGAGGGTGGAAGCTGCGTTTATAAAACATTTTTGCAATGCTAATCGCACCAAAGGAATGAACATTTTGAGACCTAAAGCAAAGAAAGAAAGACATAGAGTTACGTTTTCAGTTGGTTTCTTTGCTGGTTGTGCCATAGCTCTTGTCGTCGCCCTCATTTTTATTACACGAGCGCGACATATAATAAACAAAGAAGGCAGCACTCAGTATATGGAAACCATGTTTCCGCTTTATAGCTTGTTCGGATTTGTTGTCTTGCACCTACTAATGTATGCAGCAAACATATACTTTTGGAGGCGATACCAAGTGAATTATTCCTTCATATTTGGTTTCAAACAAGGCACTGAATTGGCCTATCGAGAGGTTCTTCTTCCCAGTTTTGCTTTGGCAACTCTTGCTTTAGCTTGTGTTCTTTCTAATCTTGACATGGAGATGGACTCTGTTACCCAGTCATATCAAGCAGTGACTGAACTTCTGCCTTTGGTTTTGCTCCTTGTTGTGATTGCAGTCTTCTTTTGTCCACTCAACATCTTATATCGCTCTAGTCGCATCTTCTGCATAAGAACTTTGTACCACTGTATATGTGCTCCTCTCTACACGGTTATCTTTCCCGATTTCTTCTTAGCAGATCAGTTAACCAGCCAGGTGCAAGCACTTCGTAGCTTGGAATTCTACATTTGCTATTACGGTTGGGGGGACTACAAGCATCGACGGAATACTTGTGGAACTAACACTGTATTCAACACATTCAGTTTTATCATAGCTGTTATTCCATATTGGTCACGTCTTCTTCAGTGTCTCAGGAGATTGTATGAGGAGAAAGACGCAATGCAGGGATATAATGGAATCAAGTACTTCTTGACAATTGTAGCTGTGTGCTTAAGGACAGCTTACAGTCTGAACAAGGGAGTAATAGCGTGGAAAGTGCTAGCCGCAATTTTCTCAGCCCTTGCTGCCATCATATGCACGTATTGGGACATCGCCATTGACTGGGGTCTTCTGCAGCGCCACTCAAAAAACCGATGGTTGAGAGACAAGCTACTTGTTGGTCACAACAGTGTATACTATGTTGCAATGGTCTTGAATGTATTACTGAGGTTTGCTTGGCTGCAAACCGTGTTGGATTTTCAATTCTCCTTCCTGCATACACAAGGTTTGATTACAATAGTGGCCAGCCTCGAGATCATTCGTCGTGGCATATGGAATTTCTTCAGGTTGGAGAATGAGCATCTGAACAATGTTGGGAAGTATCGTGCATTCAAATCTGTACCGCTACCTTTCAACTATGATGAAGATGATGACAAAGATGATTAA 2697 41.86 SLESFLYKYSTFLILHHTILILINISSNYKLKTSAVIIYLCCWIDQRTLSLFLCKYESVSSSPKSSSNMKFGKQFTAQMVPEWQQAYMDYDFLKSLLKQIDTFNKTHARNQPSSHSGQLRRTLTLYRAFSGLTLRHSHSHGHGHGHGHGHNSYPASPAGSPQDGVEEQAILVNAVNRDGTKKYRTTFLMADEEGGEYELVYFRSLDREFNKVDKFYKAKVEEVVKEASVLNKQMNALIAFRIKVENPEGVWDFSGDRRAEEMTRLATDIAVSTAALSSSTPSGVRASRRVHIAMDSIEEGSSHNERSSHKPNNESSKDEDEDEKEDQKKKSKGGEDNSEGKSRKMMANRPPPLELLDRVTMNTTTETPRSTIKGLLNFPKNSELQFNKDNLNKIENQLKKAFVVFYHKLRLLKSFSFLNTLAFSKIMKKYDKITSRDAGKSYMKMVDSSYLGSSDEVSKLMERVEAAFIKHFCNANRTKGMNILRPKAKKERHRVTFSVGFFAGCAIALVVALIFITRARHIINKEGSTQYMETMFPLYSLFGFVVLHLLMYAANIYFWRRYQVNYSFIFGFKQGTELAYREVLLPSFALATLALACVLSNLDMEMDSVTQSYQAVTELLPLVLLLVVIAVFFCPLNILYRSSRIFCIRTLYHCICAPLYTVIFPDFFLADQLTSQVQALRSLEFYICYYGWGDYKHRRNTCGTNTVFNTFSFIIAVIPYWSRLLQCLRRLYEEKDAMQGYNGIKYFLTIVAVCLRTAYSLNKGVIAWKVLAAIFSALAAIICTYWDIAIDWGLLQRHSKNRWLRDKLLVGHNSVYYVAMVLNVLLRFAWLQTVLDFQFSFLHTQGLITIVASLEIIRRGIWNFFRLENEHLNNVGKYRAFKSVPLPFNYDEDDDKDD 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2508238 2514291 + MELO3C012122.2.1 Cme10g00389 339275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00389 898 Pfam SPX domain 69 446 IPR004331 -
Cme10g00389 898 Pfam EXS family 535 872 IPR004342 GO:0016021
Cme10g00389 898 ProSiteProfiles SPX domain profile. 69 444 IPR004331 -
Cme10g00389 898 ProSiteProfiles EXS domain profile. 703 898 IPR004342 GO:0016021
Cme10g00389 898 CDD SPX_PHO1_like 70 440 IPR034092 -
Cme10g00389 898 MobiDBLite consensus disorder prediction 296 355 - -
Cme10g00389 898 PANTHER PHOSPHATE TRANSPORTER PHO1 HOMOLOG 3 69 898 - -
Cme10g00389 898 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 69 898 - -
Cme10g00389 898 MobiDBLite consensus disorder prediction 296 343 - -
Cme10g00389 898 MobiDBLite consensus disorder prediction 137 163 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00389 - - - csv:101215812 1567.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00389 Cme-Chr10:2508238 Cme10g00391 Cme-Chr10:2519820 0 proximal
Cme06g00473 Cme-Chr6:2995739 Cme10g00389 Cme-Chr10:2508238 6.50E-121 transposed
Cme08g01367 Cme-Chr8:11121693 Cme10g00389 Cme-Chr10:2508238 9.33E-21 transposed
Cme09g00724 Cme-Chr9:8522312 Cme10g00389 Cme-Chr10:2508238 0 transposed
Cme10g00307 Cme-Chr10:2012708 Cme10g00389 Cme-Chr10:2508238 1.08E-129 transposed
Cme10g00389 Cme-Chr10:2508238 Cme09g00246 Cme-Chr9:1859524 1.40E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g964 . . . . . . . . . Cmo18g01150 . Cma18g01128 . Car18g01042 Sed06g1507 . . Bhi07g01530 Tan04g1051 Cmetu06g0752 Lac13g0343 Hepe10g1767 . . Cla05g02420 Cam05g2601 Cec05g2632 Cco05g2672 Clacu05g2602 Cmu05g2456 Cre05g2572 . . . . Lsi04g00392 . Chy10g01029 Cme10g00389 . . . . . . . . . . . . . . Car15g00256 Cpe13g00964 . . . . . . . . . . . . . . . . . Chy09g00228 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000170 6 7 5 5 5 5 11 5 5 5 6 5 10 5 5 10 5 0 5 5 5 8 5 7 8 5 5 12 17 6 193
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00389 Cme_Chr10 FPKM 7.615251 7.874106 11.697165 12.594826 14.226071 13.817408 14.942278 24.399227 23.457458 26.69977