Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00393 ATGACGAGGGCTTTTAGAAGACGAACTTCGTATACAAGGCCTATAGATCGCTTCCGATTCCGAGCATCGGCGGACGGTGCTACGAAATCTGGATTCATCAGAGATATGAAGCTGAAGGAGATCTTGACTCCTTTGTTTATTGGTCTTCCGTTGGTTGTTTTTGTCGTTTTGGTGTTTAGGAATTCAACGGTGGATCTTTCCGTGGGTTTTGCTGAAGCCAGAGCATTGGAAAGAGTTCCCAATAATGGGGGTTCTGAGAGTTCAGGTTCAGAAAACGGATCCGCTCGACTTTCCAGTGGAGAGAAACTTATTGGAGGACTTCTAATTCCTGGATTTGATGAAGGATCGTGCTTGAGTAGATATCGGTCCAGTTTATATCGAAGAACTTCAACCCACAAACCTTCTTTGTATCTCCTCTCGATGCTTAGAGACTACGAAGCACTTCATCGACGGTGTGGTCCCCATACAAAACCATATGATGAAGCAGTAGAGCAACTTAAATCTGGTAATAGTGTTAGTTTGACAGAGTGTAAATATGTTGTGTGGATGTCTTATAGTGGCTTGGGAAACAAGATACTCACTTTGGCTTCTGCATTCCTCTATGCCCTCCTTACCAATCGTGTTTTGCTTGTTGATGGGGGTAAGGATATGGCAGATCTATTTTGTGAGCCCTTCCCAGAAAAATCTTGGTTACTACCAAATGACTTCCCCTTGGTGGATCAATTCGGCAACTTCGATTCAAAATCTCCTAATTGTCATGGAAATATGCTTAAGATGAACACTCTAAATACGTCAATAGAATCAGTCCCATCCTATCTATACCTACATTTGGCTCATGATTATGATGATCACGACAAGCTGTTTTTTTGTGATCAAGAACAGGCTCTTTTAGATAGGGTCCCGTGGCTTATACTGAAGACAGATAACTACTTTGTTCCATCTCTCTTCTTGATCCCATCTTTTGAGCACAAACTGAGTAACTTATTCCTGCAAAAAGACACCATCTTCCATCATCTAGGCCGTTATCTTTTCCACCCATCAAATCATGTTTGGGGTCTAATAACAAGATACTACGAAGCATATCTAGCAAGTGCAGATGAAAGAATAGGAATTCAAGTAAGAGTGTTCGAGAGTGAACCGGGGCCATTCCAACATGTAATGGATCAAATTTTAGGCTGTACACTTAAGGAGAAGCTACTGCCTGAGGTAGACAAGGAAGGCTCCTCTTCTGTGCCTCTGGAACGCCCGAGAGTGAAAGCTGTTTTGATGACATCTTTAAGTTCTGGATACTATGAACAATTGAGAACCTTGTACTGGGAATACCCGACTAAGACCGGAGATGTCATTACAGTTTATCAGCCAAGCTACGAAATGTATCAGCAGACAGAGAAGAAGACTCACAATAGGAAAGCATGGGCAGAAATTTACCTTCTGAGTTTGAGCGATGTATTGGTGACCAGTGCATGGTCAACATTCGGGTATGTGGCTCAAGGGCTCAGTGGATCGAAGCCATGGATTCTTTACAAGGCTGAGAACATGACCACGCCCAATCCACCATGTCGTAGGGCGATGTCAATGGAGCCTTGTTTTCATGCTCCGCCATTCTATGACTGCAAAGCAAAGAAAGGAATAGATACAGGTAAAGTTGTTCCCCATGTAAGACATTGTGAAGACATGAGCTGGGGGCTTAAGCTTGTTCACCATGAGGATTTATAA 1716 42.95 MTRAFRRRTSYTRPIDRFRFRASADGATKSGFIRDMKLKEILTPLFIGLPLVVFVVLVFRNSTVDLSVGFAEARALERVPNNGGSESSGSENGSARLSSGEKLIGGLLIPGFDEGSCLSRYRSSLYRRTSTHKPSLYLLSMLRDYEALHRRCGPHTKPYDEAVEQLKSGNSVSLTECKYVVWMSYSGLGNKILTLASAFLYALLTNRVLLVDGGKDMADLFCEPFPEKSWLLPNDFPLVDQFGNFDSKSPNCHGNMLKMNTLNTSIESVPSYLYLHLAHDYDDHDKLFFCDQEQALLDRVPWLILKTDNYFVPSLFLIPSFEHKLSNLFLQKDTIFHHLGRYLFHPSNHVWGLITRYYEAYLASADERIGIQVRVFESEPGPFQHVMDQILGCTLKEKLLPEVDKEGSSSVPLERPRVKAVLMTSLSSGYYEQLRTLYWEYPTKTGDVITVYQPSYEMYQQTEKKTHNRKAWAEIYLLSLSDVLVTSAWSTFGYVAQGLSGSKPWILYKAENMTTPNPPCRRAMSMEPCFHAPPFYDCKAKKGIDTGKVVPHVRHCEDMSWGLKLVHHEDL 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2530034 2533017 + MELO3C012118.2.1 Cme10g00393 339279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00393 571 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE 6 570 - -
Cme10g00393 571 PANTHER FUCOSYLTRANSFERASE 2-RELATED 6 570 IPR004938 GO:0008107|GO:0016020|GO:0042546
Cme10g00393 571 Pfam Xyloglucan fucosyltransferase 98 539 IPR004938 GO:0008107|GO:0016020|GO:0042546
Cme10g00393 571 Gene3D - 174 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00393 K13681 FUT; xyloglucan fucosyltransferase [EC:2.4.1.-] - csv:101216541 1072.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01442 Cme-Chr7:20116417 Cme10g00393 Cme-Chr10:2530034 0 transposed
Cme10g00393 Cme-Chr10:2530034 Cme12g01977 Cme-Chr12:25573140 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme10g00393 . 101 565 Xyloglucan Fucosyltransferase1 AT1G14080 55.9 2.3e-153 539.3
Cme12g01977 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.4 3.7e-151 531.9
Cme10g00393 . 99 566 Xyloglucan Fucosyltransferase1 AT1G14100 59.4 2.0e-162 569.3
Cme12g01977 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 5.4e-160 561.2
Cme10g00393 . 79 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.1 2.9e-139 492.3
Cme12g01977 . 112 582 Xyloglucan Fucosyltransferase1 AT1G14110 52.3 6.2e-134 474.6
Cme06g01334 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 61.9 1.7e-182 636.0
Cme01g00052 . 128 455 Xyloglucan Fucosyltransferase1 AT1G49710 75.1 1.2e-148 523.5
Cme03g01095 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.7 3.2e-168 588.2
Cme10g00393 . 97 539 Xyloglucan Fucosyltransferase1 AT1G74420 51.6 9.8e-123 437.6
Cme10g00393 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.7 8.6e-183 637.1
Cme12g01977 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.3 1.4e-169 593.2
Cme07g01442 . 40 521 Xyloglucan Fucosyltransferase1 AT2G03210 50.3 1.1e-137 487.3
Cme10g00393 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 62.5 5.1e-196 681.0
Cme12g01977 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.8 1.6e-189 659.4
Cme07g01442 . 28 521 Xyloglucan Fucosyltransferase1 AT2G03220 50.8 1.2e-147 520.4
Cme10g00393 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 55.0 3.4e-154 542.0
Cme12g01977 . 95 583 Xyloglucan Fucosyltransferase1 AT2G15350 50.8 2.0e-146 516.2
Cme10g00393 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.5 9.3e-147 517.3
Cme12g01977 . 106 583 Xyloglucan Fucosyltransferase1 AT2G15370 50.8 2.6e-141 499.2
Cme10g00393 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 53.2 1.3e-148 523.5
Cme12g01977 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.3 5.7e-144 508.1
Cme06g01334 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.0 8.9e-184 640.2
Cme01g00052 . 128 455 Xyloglucan Fucosyltransferase1 AT3G19280 76.8 3.1e-152 535.4
Cme10g00393 . 97 539 Xyloglucan Fucosyltransferase1 AT1G74420 51.6 9.8e-123 437.6
Cme10g00393 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.7 8.6e-183 637.1
Cme12g01977 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.3 1.4e-169 593.2
Cme07g01442 . 40 521 Xyloglucan Fucosyltransferase1 AT2G03210 50.3 1.1e-137 487.3
Cme10g00393 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 62.5 5.1e-196 681.0
Cme12g01977 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.8 1.6e-189 659.4
Cme07g01442 . 28 521 Xyloglucan Fucosyltransferase1 AT2G03220 50.8 1.2e-147 520.4
Cme10g00393 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.7 8.6e-183 637.1
Cme12g01977 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.3 1.4e-169 593.2
Cme07g01442 . 40 521 Xyloglucan Fucosyltransferase1 AT2G03210 50.3 1.1e-137 487.3
Cme10g00393 . 97 539 Xyloglucan Fucosyltransferase1 AT1G74420 51.6 9.8e-123 437.6
Cme10g00393 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 53.2 1.3e-148 523.5
Cme12g01977 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.3 5.7e-144 508.1
Cme10g00393 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.5 9.3e-147 517.3
Cme12g01977 . 106 583 Xyloglucan Fucosyltransferase1 AT2G15370 50.8 2.6e-141 499.2
Cme10g00393 . 101 565 Xyloglucan Fucosyltransferase1 AT1G14080 55.9 2.3e-153 539.3
Cme12g01977 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.4 3.7e-151 531.9
Cme10g00393 . 99 566 Xyloglucan Fucosyltransferase1 AT1G14100 59.4 2.0e-162 569.3
Cme12g01977 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 5.4e-160 561.2
Cme10g00393 . 79 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.1 2.9e-139 492.3
Cme12g01977 . 112 582 Xyloglucan Fucosyltransferase1 AT1G14110 52.3 6.2e-134 474.6
Cme10g00393 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 55.0 3.4e-154 542.0
Cme12g01977 . 95 583 Xyloglucan Fucosyltransferase1 AT2G15350 50.8 2.0e-146 516.2
Cme06g01334 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.0 8.9e-184 640.2
Cme01g00052 . 128 455 Xyloglucan Fucosyltransferase1 AT3G19280 76.8 3.1e-152 535.4
Cme06g01334 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 61.9 1.7e-182 636.0
Cme01g00052 . 128 455 Xyloglucan Fucosyltransferase1 AT1G49710 75.1 1.2e-148 523.5
Cme03g01095 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.7 3.2e-168 588.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009001 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00393 Cme_Chr10 FPKM 13.913257 13.760939 7.08069 6.696675 10.215632 11.051968 12.554955 7.847688 6.935163 6.584477