Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00395 ATGGAAGCAACCCACAATCCCTACACCAAATTGTTGCTCACCGGCCTCTCCGCCATGGTGGCGGAGTCCGCCACCTTCCCCATAGACCTCACTAAGACCAGGCTTCAGCTTCACGGCGAGTCTTCCTCTTCCTCTCGCTCCACAAATGCCTTCAGACTCGCTTCAGCCATTGTCAAGGACCAAGGTCCTTTTGCCCTCTACAAAGGCTTGTCTCCCGCGATTCTCAGGCACCTCTTCTATACGCCCATACGAATCGTTGGATACGAACACCTCCGATCCCTCTTCCTTGCGTCCGATGCTGGCTCTGTTTCCTTCCATTCCAAGGCTCTTGTCGGTGGAATCTCCGGCTCCATTGCTCAGGTAGTGGCAAGTCCTGCTGATCTTGTTAAGGTGAGGATGCAAGCTGATGGGCGTCTAATAAGTCAAGGTCTGCAACCTAGATACTCAGGGCCTTTCGATGCCTTGACCAAGATAGTGCGTGGAGAAGGGGTTGTTGGACTTTGGAAAGGGGTTGTTCCAAATGTTCAAAGAGCATTTTTGGTTAACATGGGAGAATTAGCCTGCTATGATCATGCTAAACGTTTTGTTATTCAGAATCAAATAGCTGGAGATAATATTTTTGGCCACACCTGTGCTTCTGTAATTTCGGGTCTGTGTGCAACTGCTTTGAGTTGTCCAGCCGATGTTGTAAAGACAAGAATGATGAATCAAGCTGCTAGCAAGGAAGGAATTACCAAGTACAACAGCTCTTATGATTGTCTTGTGAAGACTGTTAAAGTTGAAGGATTGAGAGCTTTGTGGAAGGGGTTTTTTCCTACTTGGGCCAGGCTTGGTCCTTGGCAATTTGTCTTCTGGGTGTCTTATGAGAAGTTTCGTAAACTTGCTGGGTTATCTTCCTTCTAG 903 47.95 MEATHNPYTKLLLTGLSAMVAESATFPIDLTKTRLQLHGESSSSSRSTNAFRLASAIVKDQGPFALYKGLSPAILRHLFYTPIRIVGYEHLRSLFLASDAGSVSFHSKALVGGISGSIAQVVASPADLVKVRMQADGRLISQGLQPRYSGPFDALTKIVRGEGVVGLWKGVVPNVQRAFLVNMGELACYDHAKRFVIQNQIAGDNIFGHTCASVISGLCATALSCPADVVKTRMMNQAASKEGITKYNSSYDCLVKTVKVEGLRALWKGFFPTWARLGPWQFVFWVSYEKFRKLAGLSSF 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2537253 2539026 - MELO3C012116.2.1 Cme10g00395 339281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00395 300 PANTHER MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED 4 292 - -
Cme10g00395 300 PRINTS Mitochondrial carrier protein signature 10 23 IPR002067 GO:0055085
Cme10g00395 300 PRINTS Mitochondrial carrier protein signature 23 37 IPR002067 GO:0055085
Cme10g00395 300 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085
Cme10g00395 300 PRINTS Mitochondrial carrier protein signature 213 235 IPR002067 GO:0055085
Cme10g00395 300 SUPERFAMILY Mitochondrial carrier 5 290 IPR023395 -
Cme10g00395 300 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 195 IPR018108 -
Cme10g00395 300 ProSiteProfiles Solute carrier (Solcar) repeat profile. 9 94 IPR018108 -
Cme10g00395 300 PANTHER MITOCHONDRIAL UNCOUPLING PROTEIN 4 4 292 - -
Cme10g00395 300 Pfam Mitochondrial carrier protein 205 295 IPR018108 -
Cme10g00395 300 Pfam Mitochondrial carrier protein 103 199 IPR018108 -
Cme10g00395 300 Pfam Mitochondrial carrier protein 6 96 IPR018108 -
Cme10g00395 300 ProSiteProfiles Solute carrier (Solcar) repeat profile. 204 294 IPR018108 -
Cme10g00395 300 Gene3D Mitochondrial carrier domain 9 296 IPR023395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00395 K15112 SLC25A27, UCP4; solute carrier family 25 (mitochondrial uncoupling protein), member 27 - csv:101217011 592.423
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02740 Cme-Chr4:32717753 Cme10g00395 Cme-Chr10:2537253 5.93E-14 dispersed
Cme08g02495 Cme-Chr8:31853662 Cme10g00395 Cme-Chr10:2537253 3.15E-14 dispersed
Cme10g00395 Cme-Chr10:2537253 Cme04g00109 Cme-Chr4:864146 3.19E-10 dispersed
Cme10g00395 Cme-Chr10:2537253 Cme11g01352 Cme-Chr11:20346775 5.66E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g939 . . . . . . Bma14g01655 . Cmo04g01752 . . . . . Sed07g1949 . Cpe01g01479 Bhi07g01537 Tan04g1057 Cmetu10g0340 Lac13g0337 Hepe10g1763 . . Cla05g02425 Cam05g2607 Cec05g2641 Cco05g2679 Clacu05g2609 Cmu05g2462 Cre05g2578 . . Cone6ag0567 . Lsi04g00400 Csa05g02475 Chy10g01023 Cme10g00395 . Blo11g00784 Bda07g01476 . . . . . . . . Cma04g01673 . Car04g01711 . . Cpe07g00162 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011715 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00395 Cme_Chr10 FPKM 5.848485 6.681681 0.0 0.0 0.0 0.0 0.0 0.154563 0.0 0.0