Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00401 ATGAACCTTTGCACATCTGCTCCAACTTCAGTCATCTTCCCCAAATTCAATGCTTCTCAACATGTCAGATGTAGATCATCATCATTCTACAAATGCTCTCATCAGAGCAATCTGGAATCGCCCAAGAGAAGCGATTTAAAGATAGAGCCACCATTCCCACGTTTGCTTTGCCAAAACCATTCTTGCTTATGCGGCAGAAGGCAGTTCATTGAAGCAGCTGCAGCTACATCTCTGCTCCCTCTTTGCCCTTCAATGGCTTCTTCTAATCCATCCTCTGATTACACTGCTATGTTGAATAGGGTTCGCTCTCCTAAGCCAGAATGGTATGAGGATTTCTTTGCTTCATTTCTGGCTAATTCCATGAAATCGTATGAAGAGGAGATTGCAGATTACAAGTCCCAGATGTTTGCCAATTTGAGTGGGAAGGCTCAGAAAGTGTTGGAGATTGGAATTGGTGCAGGTCCTAACCTTAAGTATTATGCTGGGGATGAAGGTGTGCAGGTTTATGGTGTGGATCCAAATCAAAAAATGGAGAAATATGCTCGAGAAGCAGCACAGAATGCTGGTTTGCCACCAGAGAATTTTGTGTTTAAACAAGCGTTGTTGAGATTCACAAGCCTCATTGAGAAGAAGTATACACTAGAGTTCAACTACGTCTTGAGGTCATGCCCAATTGAGAGAGTTCAAGAAGTTTACAAGCACGTTGGTGAGGCTATACCACTACCTGATGCTTCTGTCGATGCTGTTGTTGGAACACTTGTCTTGTGCTCTGTGACCAATGTTGACATGACTCTAAAGGAGGTGAAGAGGGTTCTAAGACCTGGTGGACTATACATATTTGTCGAACATGTTGCTGCAAAAGAAGAAACCATGCTTCGATTTATGCAGAATGCGCTTGATCCTCTGCAACAAATTGTTTTTGATGGATGTCACCTTACTCGGACGACAGGATCAAATATAATTGGAGCAGGGTTTTCAAATGTTGATCTAAACATGGCTTCATTCTCTAGTTTGGCCTTCATAAATCCTCAAGTCTATGTATTCTTTGGTTCTTACCTTCAATACCCACCAGCTAATAAATACAACAATCATAGGAATTTAGCTAAGTTGGCTTGGGGACCTCTGATTTTGCTATTTCCAGCAGCTCATTATGAGCTCATTAAATGTGCAGCATATGGACCTTCTCACTGTTGGCTTGATGGGTTTATGACTTCTTTTTGTGACGGTTTTTCTGATGGCAGTTATGTTGTGGTTGGGTCATGGACTAAGAAGGAATCTGGGAACAAAGATAGAGGGTTATCATCTGTAACGAAGAATTTATGCGAATGTGAAAATTTTGAGTTGATATTCAAGGGCTATTTGCTTACTGGAAGTGTGGGTTTTGACTTCCAAATGTTGTTGTATTTCATGATGTAG 1416 41.38 MNLCTSAPTSVIFPKFNASQHVRCRSSSFYKCSHQSNLESPKRSDLKIEPPFPRLLCQNHSCLCGRRQFIEAAAATSLLPLCPSMASSNPSSDYTAMLNRVRSPKPEWYEDFFASFLANSMKSYEEEIADYKSQMFANLSGKAQKVLEIGIGAGPNLKYYAGDEGVQVYGVDPNQKMEKYAREAAQNAGLPPENFVFKQALLRFTSLIEKKYTLEFNYVLRSCPIERVQEVYKHVGEAIPLPDASVDAVVGTLVLCSVTNVDMTLKEVKRVLRPGGLYIFVEHVAAKEETMLRFMQNALDPLQQIVFDGCHLTRTTGSNIIGAGFSNVDLNMASFSSLAFINPQVYVFFGSYLQYPPANKYNNHRNLAKLAWGPLILLFPAAHYELIKCAAYGPSHCWLDGFMTSFCDGFSDGSYVVVGSWTKKESGNKDRGLSSVTKNLCECENFELIFKGYLLTGSVGFDFQMLLYFMM 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2559144 2564208 + MELO3C012110.2.1 Cme10g00401 339287

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00401 471 CDD AdoMet_MTases 145 281 - -
Cme10g00401 471 Coils Coil 114 134 - -
Cme10g00401 471 Gene3D Vaccinia Virus protein VP39 99 336 IPR029063 -
Cme10g00401 471 PANTHER METHYLTRANSFERASE LIKE 7B 41 200 - -
Cme10g00401 471 PANTHER METHYLTRANSFERASE LIKE 7B 230 346 - -
Cme10g00401 471 Pfam Methyltransferase domain 147 280 IPR013216 GO:0008168
Cme10g00401 471 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 107 341 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00401 - - - csv:101203371 572.778
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00400 Cme-Chr10:2556684 Cme10g00401 Cme-Chr10:2559144 4.07E-168 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g928 Blo01g00430 . Bda01g02150 . . . . . . Cmo18g01156 . Cma18g01136 . Car18g01048 Sed07g1943 . . Bhi07g01543 Tan04g1063 Cmetu10g0469 Lac13g0332 Hepe10g1758 . . . . . . . . . . . Cone6ag0575 . Lsi04g00404 Csa05g02470 Chy10g01018 Cme10g00401 . . . . . Bpe02g02337 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009174 2 1 1 0 1 1 1 1 1 2 1 1 1 2 2 1 1 1 0 1 2 1 1 1 1 2 0 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00401 Cme_Chr10 FPKM 0.885253 1.05671 1.403626 1.46866 0.689059 0.603765 0.650343 3.12778 2.706218 2.506613