Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00403 ATGGCTTCTGTCCTTATCTTTTTGGCTGGCTTCTATGCCATAGTTTCCTCTGTTGATGCTTATGCAGGTGGAGGCTGGACTGGGGCTCATGCCACCTTCTATGGTGGGAGTGATGCTTCTGGGACTATGGGTGGGGCTTGTGGATATGGCAACTTATATAGCCAAGGCTATGGAACAAACACTGCTGCTTTGAGTACGGCTCTATTCAACAATGGCTTGAGCTGTGGGTCTTGCTATGAGATTAGGTGTGCCAGTGACCCTAGATGGTGCCTGCCAGGCTCCATTGTGGTCACAGCCACCAATTTCTGCCCTCCAAACAATGCTCTTCCTAACAACGCTGGAGGCTGGTGCAATCCTCCTCTTCAACACTTTGATCTCTCTCAACCCGTATTCCAACACATTGCTCAGTACAGAGCAGGGATTGTGCCTGTTGCTTACAGAAGGGTACCCTGCAGGAGAAGAGGAGGCATAAGGTTCACCATCAATGGACATTCCTACTTCAACCTGGTCCTCATCACAAACGTGGGTGGTGCTGGTGATGTACACTCAGTTTCCATCAAAGGATCAAGAACTGGTTGGCAAGCAATGTCAAGGAACTGGGGACAGAATTGGCAGAGTAACAGCTACCTAAATGGTCAAAGCCTCTCCTTCAAGGTAACCACCAGCGATGGCCGAACTGTCATCTCCAACAACGCTGTCCCAGCCGGCTGGTCCTTTGGACAGACTTATAGTGGTGCCCAATTCTGA 747 50.07 MASVLIFLAGFYAIVSSVDAYAGGGWTGAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCASDPRWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSQPVFQHIAQYRAGIVPVAYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVISNNAVPAGWSFGQTYSGAQF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2578552 2580255 + MELO3C012108.2.1 Cme10g00403 339289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00403 248 SMART dpbb_1 61 146 IPR007112 -
Cme10g00403 248 SUPERFAMILY PHL pollen allergen 153 244 IPR036749 -
Cme10g00403 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Cme10g00403 248 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Cme10g00403 248 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Cme10g00403 248 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Cme10g00403 248 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Cme10g00403 248 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Cme10g00403 248 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Cme10g00403 248 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Cme10g00403 248 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Cme10g00403 248 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Cme10g00403 248 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Cme10g00403 248 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Cme10g00403 248 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Cme10g00403 248 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Cme10g00403 248 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Cme10g00403 248 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Cme10g00403 248 Gene3D - 13 152 IPR036908 -
Cme10g00403 248 PANTHER EXPANSIN-A15 7 248 IPR002963 GO:0009664
Cme10g00403 248 SUPERFAMILY Barwin-like endoglucanases 25 174 IPR036908 -
Cme10g00403 248 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Cme10g00403 248 Pfam Lytic transglycolase 61 146 IPR009009 -
Cme10g00403 248 Gene3D - 156 248 IPR036749 -
Cme10g00403 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Cme10g00403 248 PANTHER EXPANSIN 7 248 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00403 Cme-Chr10:2578552 Cme10g00899 Cme-Chr10:6397055 7.66E-126 dispersed
Cme12g00171 Cme-Chr12:1665953 Cme10g00403 Cme-Chr10:2578552 1.06E-104 dispersed
Cme03g00419 Cme-Chr3:5765485 Cme10g00403 Cme-Chr10:2578552 2.19E-14 transposed
Cme03g01023 Cme-Chr3:19365612 Cme10g00403 Cme-Chr10:2578552 1.28E-141 transposed
Cme03g01526 Cme-Chr3:24439410 Cme10g00403 Cme-Chr10:2578552 2.50E-123 transposed
Cme05g00939 Cme-Chr5:12976236 Cme10g00403 Cme-Chr10:2578552 2.13E-145 transposed
Cme10g01247 Cme-Chr10:13121106 Cme10g00403 Cme-Chr10:2578552 1.06E-139 transposed
Cme12g01117 Cme-Chr12:19131129 Cme10g00403 Cme-Chr10:2578552 2.66E-40 transposed
Cme06g02122 Cme-Chr6:26871468 Cme10g00403 Cme-Chr10:2578552 5.13E-79 transposed
Cme10g00403 Cme-Chr10:2578552 Cme12g01981 Cme-Chr12:25595789 9.90E-107 wgd
Cme10g00403 Cme-Chr10:2578552 Cme02g01876 Cme-Chr2:25344916 1.46E-139 wgd
Cme10g00403 Cme-Chr10:2578552 Cme09g00257 Cme-Chr9:1954077 1.94E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00403 - - csv:101217956 511.531