Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00408 ATGGCTGAAGTTGAAATGAGAGATCCAATCATAAAGTTGTTTGGGAAAACCATTTCTTTGCCTTCGGATTCCAAGTTTCTTTCTTCAGAAACTACTGAAAAGGAAACTTCATGTGAAGAATTGGGATTAGAAAAAGAGGGGAATAGCAGTGGAAACCAAATCACAGATCAAACAACATCAGGAGTAAGTGAGAATCCATTAGAAGAAAGAGAGATTTCATCGCCAAAAGCTTCCAAAAATGAAGAACAAAGTGAAACAAGTAATTCCCCTGACAACAAAACCTCAAAAAAACCAGACAAAATCCTTCCTTGCCCTCGATGTAACAGCATGGACACCAAATTCTGTTACTTCAACAATTACAATGTCAATCAACCTCGTCATTTTTGCAAGAATTGCCAAAGATATTGGACAGCCGGTGGGACCATGAGAAACGTTCCGGTCGGTGCCGGCCGACGAAAGAATAAAAACTCCTCATCTTCACATTTCCGTCAGTTAATAATTCCCGACGGCGGAATTCACCCCCATCAATTTCTAGATAACAACGGAACCTTTCTCACTTTTGCCTCAGATTCTTCAATTTCCAACTCACAGAGCTGTAACCCAAATGGGTTTCTCATTAATACAGAAAACGGAGATGATCATTCAAGTAAATCTTCAATTACAGTTTCGAATTCATCAGAGAAAGGAGCTAAAATGGCTTCACAACAATCAATAGCGAAAAATGTTTTCCCTTTTCTGCCTCAATTACAGTCATTTACAGGGCTTTCATTGCCTTATTCTTCAATTACTCCACCATCGGCACCGTTCTACCCGCCAGGAATTCCGGTATCGTATTACCCTTCACAGCCGTACTGGGGCTACCTAGCGCCGCCGTCTTTGACAATAATTAATCCCAACAGTCAAAATTCGTCTACGAATTCCTCTGTATTGGGGAAACGTTCAAGAGATGGGAAATTGGTTAAAAGTCCATCAAATACAGAATCTGAGATTGTTAAACAGAAGAATAGTGAAGAACCCAGTTTGGGGATTCCAAAGACAATGAAAGTGGATGATCCAAATGAAGCAGCAAAGAGTTCTATATGGTCAACTCTAGGAATTAAGAATGATAAAAAAGCTGGTGGTGGAAGTACAAGTACAACCATCAATGGCGGTAGTCTTTTTGTCTCTTTACAACGATCTACAAAGGGAAAAGAAGAAACCCAGATTGAAAGTTGGTCGCTTTTGCAGGCAAATCCAGCAGCTTTTTCTCGGGCTTTGAAATTCCGAGAGATCGTTTAG 1278 40.22 MAEVEMRDPIIKLFGKTISLPSDSKFLSSETTEKETSCEELGLEKEGNSSGNQITDQTTSGVSENPLEEREISSPKASKNEEQSETSNSPDNKTSKKPDKILPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSSSSHFRQLIIPDGGIHPHQFLDNNGTFLTFASDSSISNSQSCNPNGFLINTENGDDHSSKSSITVSNSSEKGAKMASQQSIAKNVFPFLPQLQSFTGLSLPYSSITPPSAPFYPPGIPVSYYPSQPYWGYLAPPSLTIINPNSQNSSTNSSVLGKRSRDGKLVKSPSNTESEIVKQKNSEEPSLGIPKTMKVDDPNEAAKSSIWSTLGIKNDKKAGGGSTSTTINGGSLFVSLQRSTKGKEETQIESWSLLQANPAAFSRALKFREIV 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2599811 2601657 - MELO3C012104.2.1 Cme10g00408 339294

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00408 425 MobiDBLite consensus disorder prediction 46 67 - -
Cme10g00408 425 MobiDBLite consensus disorder prediction 298 312 - -
Cme10g00408 425 MobiDBLite consensus disorder prediction 298 350 - -
Cme10g00408 425 ProSitePatterns Zinc finger Dof-type signature. 104 140 IPR003851 GO:0003677|GO:0006355
Cme10g00408 425 MobiDBLite consensus disorder prediction 28 42 - -
Cme10g00408 425 Pfam Dof domain, zinc finger 99 156 IPR003851 GO:0003677|GO:0006355
Cme10g00408 425 ProSiteProfiles Zinc finger Dof-type profile. 102 156 IPR003851 GO:0003677|GO:0006355
Cme10g00408 425 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 5 423 - -
Cme10g00408 425 PANTHER CYCLIC DOF FACTOR 2 5 423 IPR045174 GO:0003700|GO:0006355
Cme10g00408 425 MobiDBLite consensus disorder prediction 21 102 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00408 - - - csv:105435572 773.852
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00408 Cme-Chr10:2599811 Cme12g01293 Cme-Chr12:21014709 9.15E-36 dispersed
Cme10g00408 Cme-Chr10:2599811 Cme12g01987 Cme-Chr12:25615555 4.56E-74 wgd
Cme10g00408 Cme-Chr10:2599811 Cme02g01879 Cme-Chr2:25356039 1.84E-79 wgd
Cme10g00408 Cme-Chr10:2599811 Cme04g01994 Cme-Chr4:27555012 3.60E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g924 . . . . . Bpe10g00878 Bma14g01650 Bma15g00151 Cmo04g01744 Cmo18g01164 . Cma18g01146 . Car18g01055 Sed06g1520 Cpe09g00184 Cpe01g01472 Bhi07g01554 Tan04g1071 Cmetu10g1699 Lac13g0326 Hepe10g1750 . . Cla05g02435 Cam05g2620 Cec05g2653 Cco05g2691 Clacu05g2622 Cmu05g2476 Cre05g2589 . . . . Lsi04g00411 Csa05g02462 Chy10g01010 Cme10g00408 Blo06g00909 Blo11g00777 Bda07g01470 . . . . . . . . Cma04g01665 . Car04g01704 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007008 2 1 2 2 1 1 2 1 1 1 1 1 2 1 0 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42046 PF02701 zf-Dof 5.20E-32 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00408 Cme_Chr10 FPKM 5.076991 4.813684 18.585203 17.881506 3.994269 3.785165 3.064294 2.515683 2.525367 2.471926