Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00412 ATGGCAATCTCCTGTATTCCAACTTGCCAATTCACTCTCACAAAACCAAGCTCCACCTTTTCCAAGAACGAGTTCGTAATAAATCAACTCCACCCTCTTTCTCTTTTGTCCAAATGTACATCTCTCAAGGAGCTCAAGCAAATTCAAGCATATACCATTAAAACCAATCTTCAGAGTGACATCTCTGTTCTCACCAAGCTCATTAATTTCTGCACCCTCAACCCCACAACTTCGTATATGGACCATGCCCACCATCTGTTTGATCAAATTCTCGACAAGGATATTATTCTGTTTAACATAATGGCACGGGGTTATGCTCGCTCTAATTCTCCCTATCTTGCCTTTTCTCTTTTTGCTCAACTCTTGTGCTCTGGTCTTCTTCCTGATGACTACACATTCTCGTCCCTTCTCAAGGCGTGTGCGAGTTCTAAGGCCTTGAGACAAGGTATGGGGTTGCATTGTTTTGCAGTTAAACTTGGACTGAATCATAATATTTACATATGCCCAACTCTCATAAATATGTATGCGGAGTGCAATGACATGAATGCTGCGCGTGGAGTGTTTGATGAAATGGAACAGCCATGTATTGTTAGCTATAATGCAATTATCACAGGTTATGCTCGAAGTAGTCAACCCAATGAGGCTTTGTCGTTGTTTAGAGAATTGCAAGCGAGCGATATTGAGCCTACTGATGTAACTATGCTTAGTGTAATTATGTCATGTGCTCTATTGGGAGCACTAGACCTGGGAAAGTGGATTCATGAATATGTTAAGAAGAAAGGGTTTGATAAATATGTGAAGGTGAACACTGCACTTATAGATATGTTTGCGAAATGTGGAAGTCTAACTGATGCTATTTCTATCTTTGAGGGCATGCGTGTGAGAGATACACAAGCTTGGTCTGCAATGATAGTTGCCTTTGCAACTCATGGGGATGGCTTGAAATCTATCTCAATCTTTGAAGAGATGAAGAGGGCAGGAGTTAGACCTGATGAGATCACTTTTTTGGGGCTTTTGTATGCTTGTAGTCATGCTGGACTAGTAGAACAAGGTAGAGGGTATTTCTATAGTATGTCCAGAACCTATGGGATAACACCAGGGATCAAGCATTACGGTTGTATGGTGGATTTGCTTGGTCGAACAGGTTGTTTAGATGAGGCTTATAACTTTGTAGATGAACTGGAAATTAAGCCCACGCCTATACTTTGGCGCACCCTTTTATCTGCTTGCAGCACCCATGGTAATGTCGAAATGGCAAAGCGAGTTATTGAAAGAATTTTTGAATTAGATGACTCCCATGGAGGGGACTATGTTATATTATCAAACTTATATGCTAGAGTGGGAAGATGGGAAGATGTGAATCATTTAAGGAAATTGATGAAAGATAGAGGGGTGGTGAAGGTTCCTGGTTGTAGTTCCGTGGAAGTAAACAATGTTGTACATGAATTCTTCTCTGGAGATGGAGTACACTGCGTTTCGGTGGAGTTGCGCCGAGCACTTGACGAGTTAATGAAAGAAATAAAGTTGGTGGGATATATTCCGGATACTTCTTTAGTATATCACGCTGATATGGATGAGGAAGGGAAAGAACTTGTCCTAAGATATCACAGTGAAAAATTGGCCATGGCTTTTGGGCTCCTAAACACACCTCCCGGTACAACAATAAGGGTAGCTAAGAACCTCCGTATTTGTGGAGATTGTCATAATGCTGCAAAACTTATATCCTTTATTTTCGGGAGGAAAATCGTCATTAGGGACGTTCAACGATTCCATCAATTTGAAGATGGGAAATGCTCCTGTGGTGATTTCTGGTAA 1815 41.21 MAISCIPTCQFTLTKPSSTFSKNEFVINQLHPLSLLSKCTSLKELKQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFAQLLCSGLLPDDYTFSSLLKACASSKALRQGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASDIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKSISIFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSRTYGITPGIKHYGCMVDLLGRTGCLDEAYNFVDELEIKPTPILWRTLLSACSTHGNVEMAKRVIERIFELDDSHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRALDELMKEIKLVGYIPDTSLVYHADMDEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHQFEDGKCSCGDFW 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2619332 2623194 - MELO3C012100.2.1 Cme10g00412 339298

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00412 604 Pfam DYW family of nucleic acid deaminases 511 604 IPR032867 GO:0008270
Cme10g00412 604 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 25 590 - -
Cme10g00412 604 Pfam PPR repeat family 93 141 IPR002885 -
Cme10g00412 604 Pfam PPR repeat family 194 241 IPR002885 -
Cme10g00412 604 Pfam PPR repeat family 296 342 IPR002885 -
Cme10g00412 604 TIGRFAM PPR: pentatricopeptide repeat domain 299 332 IPR002885 -
Cme10g00412 604 TIGRFAM PPR: pentatricopeptide repeat domain 197 230 IPR002885 -
Cme10g00412 604 TIGRFAM PPR: pentatricopeptide repeat domain 97 129 IPR002885 -
Cme10g00412 604 Gene3D Tetratricopeptide repeat domain 268 508 IPR011990 GO:0005515
Cme10g00412 604 Gene3D Tetratricopeptide repeat domain 28 142 IPR011990 GO:0005515
Cme10g00412 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Cme10g00412 604 Pfam E motif 413 475 IPR046848 -
Cme10g00412 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 94 128 IPR002885 -
Cme10g00412 604 Gene3D Tetratricopeptide repeat domain 143 267 IPR011990 GO:0005515
Cme10g00412 604 Pfam PPR repeat 170 192 IPR002885 -
Cme10g00412 604 Pfam PPR repeat 270 295 IPR002885 -
Cme10g00412 604 Pfam PPR repeat 371 394 IPR002885 -
Cme10g00412 604 PANTHER BNAA02G26650D PROTEIN 25 590 - -
Cme10g00412 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00412 - - - csv:116404120 1192.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00412 Cme-Chr10:2619332 Cme02g01246 Cme-Chr2:17991713 2.13E-70 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g81 . . . . . . . . . . . Cma18g01149 . . . . . . . . . . . . . . . . . . . . . . . . . . Cme10g00412 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00412 Cme_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0