Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00412 ATGGCAATCTCCTGTATTCCAACTTGCCAATTCACTCTCACAAAACCAAGCTCCACCTTTTCCAAGAACGAGTTCGTAATAAATCAACTCCACCCTCTTTCTCTTTTGTCCAAATGTACATCTCTCAAGGAGCTCAAGCAAATTCAAGCATATACCATTAAAACCAATCTTCAGAGTGACATCTCTGTTCTCACCAAGCTCATTAATTTCTGCACCCTCAACCCCACAACTTCGTATATGGACCATGCCCACCATCTGTTTGATCAAATTCTCGACAAGGATATTATTCTGTTTAACATAATGGCACGGGGTTATGCTCGCTCTAATTCTCCCTATCTTGCCTTTTCTCTTTTTGCTCAACTCTTGTGCTCTGGTCTTCTTCCTGATGACTACACATTCTCGTCCCTTCTCAAGGCGTGTGCGAGTTCTAAGGCCTTGAGACAAGGTATGGGGTTGCATTGTTTTGCAGTTAAACTTGGACTGAATCATAATATTTACATATGCCCAACTCTCATAAATATGTATGCGGAGTGCAATGACATGAATGCTGCGCGTGGAGTGTTTGATGAAATGGAACAGCCATGTATTGTTAGCTATAATGCAATTATCACAGGTTATGCTCGAAGTAGTCAACCCAATGAGGCTTTGTCGTTGTTTAGAGAATTGCAAGCGAGCGATATTGAGCCTACTGATGTAACTATGCTTAGTGTAATTATGTCATGTGCTCTATTGGGAGCACTAGACCTGGGAAAGTGGATTCATGAATATGTTAAGAAGAAAGGGTTTGATAAATATGTGAAGGTGAACACTGCACTTATAGATATGTTTGCGAAATGTGGAAGTCTAACTGATGCTATTTCTATCTTTGAGGGCATGCGTGTGAGAGATACACAAGCTTGGTCTGCAATGATAGTTGCCTTTGCAACTCATGGGGATGGCTTGAAATCTATCTCAATCTTTGAAGAGATGAAGAGGGCAGGAGTTAGACCTGATGAGATCACTTTTTTGGGGCTTTTGTATGCTTGTAGTCATGCTGGACTAGTAGAACAAGGTAGAGGGTATTTCTATAGTATGTCCAGAACCTATGGGATAACACCAGGGATCAAGCATTACGGTTGTATGGTGGATTTGCTTGGTCGAACAGGTTGTTTAGATGAGGCTTATAACTTTGTAGATGAACTGGAAATTAAGCCCACGCCTATACTTTGGCGCACCCTTTTATCTGCTTGCAGCACCCATGGTAATGTCGAAATGGCAAAGCGAGTTATTGAAAGAATTTTTGAATTAGATGACTCCCATGGAGGGGACTATGTTATATTATCAAACTTATATGCTAGAGTGGGAAGATGGGAAGATGTGAATCATTTAAGGAAATTGATGAAAGATAGAGGGGTGGTGAAGGTTCCTGGTTGTAGTTCCGTGGAAGTAAACAATGTTGTACATGAATTCTTCTCTGGAGATGGAGTACACTGCGTTTCGGTGGAGTTGCGCCGAGCACTTGACGAGTTAATGAAAGAAATAAAGTTGGTGGGATATATTCCGGATACTTCTTTAGTATATCACGCTGATATGGATGAGGAAGGGAAAGAACTTGTCCTAAGATATCACAGTGAAAAATTGGCCATGGCTTTTGGGCTCCTAAACACACCTCCCGGTACAACAATAAGGGTAGCTAAGAACCTCCGTATTTGTGGAGATTGTCATAATGCTGCAAAACTTATATCCTTTATTTTCGGGAGGAAAATCGTCATTAGGGACGTTCAACGATTCCATCAATTTGAAGATGGGAAATGCTCCTGTGGTGATTTCTGGTAA 1815 41.21 MAISCIPTCQFTLTKPSSTFSKNEFVINQLHPLSLLSKCTSLKELKQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFAQLLCSGLLPDDYTFSSLLKACASSKALRQGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASDIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKSISIFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSRTYGITPGIKHYGCMVDLLGRTGCLDEAYNFVDELEIKPTPILWRTLLSACSTHGNVEMAKRVIERIFELDDSHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRALDELMKEIKLVGYIPDTSLVYHADMDEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHQFEDGKCSCGDFW 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2619332 2623194 - MELO3C012100.2.1 Cme10g00412 339298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00412 604 Pfam DYW family of nucleic acid deaminases 511 604 IPR032867 GO:0008270
Cme10g00412 604 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 25 590 - -
Cme10g00412 604 Pfam PPR repeat family 93 141 IPR002885 -
Cme10g00412 604 Pfam PPR repeat family 194 241 IPR002885 -
Cme10g00412 604 Pfam PPR repeat family 296 342 IPR002885 -
Cme10g00412 604 TIGRFAM PPR: pentatricopeptide repeat domain 299 332 IPR002885 -
Cme10g00412 604 TIGRFAM PPR: pentatricopeptide repeat domain 197 230 IPR002885 -
Cme10g00412 604 TIGRFAM PPR: pentatricopeptide repeat domain 97 129 IPR002885 -
Cme10g00412 604 Gene3D Tetratricopeptide repeat domain 268 508 IPR011990 GO:0005515
Cme10g00412 604 Gene3D Tetratricopeptide repeat domain 28 142 IPR011990 GO:0005515
Cme10g00412 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Cme10g00412 604 Pfam E motif 413 475 IPR046848 -
Cme10g00412 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 94 128 IPR002885 -
Cme10g00412 604 Gene3D Tetratricopeptide repeat domain 143 267 IPR011990 GO:0005515
Cme10g00412 604 Pfam PPR repeat 170 192 IPR002885 -
Cme10g00412 604 Pfam PPR repeat 270 295 IPR002885 -
Cme10g00412 604 Pfam PPR repeat 371 394 IPR002885 -
Cme10g00412 604 PANTHER BNAA02G26650D PROTEIN 25 590 - -
Cme10g00412 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00412 Cme-Chr10:2619332 Cme02g01246 Cme-Chr2:17991713 2.13E-70 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00412 - - csv:116404120 1192.56