Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00425 ATGATCATGGATGGTGAAAATGGGATCCGAAGACCTAATTTTCCATTACAATTGTTGGAGAAGAAAAAGGAAGAGGAAGAAGAACAACAACAACAACACCCATGTTCCTCCTCCGCAAACAACGGAGGAACAAAAACAACAACGACAATAACAACAACTCCAAATTCAAATCTTCAATCTTCTTCTTCGCCTAAGAAGCCACCTCCCAAAAGGGCCACCACCAAAGACCGTCACACGAAAGTCGATGGCCGTGGTCGTCGGATTCGGATGCCTGCCCTTTGTGCTGCTAGGGTTTTTCAACTCACTCGAGAGCTCGGTCACAAGTCCGACGGTGAAACTATTGAGTGGCTTCTACAACAGGCTGAGCCTGCCGTTATCGCTGCGACTGGTACTGGTACTATTCCAGCTAATTTTACTTCACTTAATATCTCTCTTCGTAGCTCTGGCTCCACCATCTCCGCTCCTTCTCATCTTCGGACGAGTTATTTCAGTCCCACTCAATTCGCCGTTAGAACGAGATCGGATCTTTGGGATAGAACCAACAATCATAATCATAATCTTGTTGATGATTCGTCTACATTCTTGAATTTCAATTCTTCTAGTTACGTGAACGTGTTCAAGCAAGATCAAGGTGGGATTGATGTAGTAGAGACGGGGAAAAAACGGCGGTCGGAGCAATCGGAATCGTCGTCAGAGAATTATATGGTTCAAACGAGTACCGGTTCTATTCCGGCGAGTCAAAGCAGTCAATTGCCGGCGACATTTTGGATGGTGACGAATCCTACCAATCAAGGGAGTGATCAGATGTGGACATTTCCGTCGGTGGGAAACAGCAGTATGTTAAGAGGGACGGGTGGCGGTGGTGGTGGCGGCGGAGGGTTTCATTTCATGAATCTGCCACCACCAATGGCACTTTTGCCAAGTGGGCAACAGTTGGGGACAGGGATCGGAGGTGGTGGTGGTCCGGCGACGGACAGCCACTTGGGGATGTTGGCGGCTCTAAGTGCTTATAGAACAACGATGCCGGGATTGTCAGTATCAGAATCTCCGACAAGAGGAGTCGGCGGCGTTACTTCTAATAATCCTGATCAATCATAG 1098 47.91 MIMDGENGIRRPNFPLQLLEKKKEEEEEQQQQHPCSSSANNGGTKTTTTITTTPNSNLQSSSSPKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRTSYFSPTQFAVRTRSDLWDRTNNHNHNLVDDSSTFLNFNSSSYVNVFKQDQGGIDVVETGKKRRSEQSESSSENYMVQTSTGSIPASQSSQLPATFWMVTNPTNQGSDQMWTFPSVGNSSMLRGTGGGGGGGGGFHFMNLPPPMALLPSGQQLGTGIGGGGGPATDSHLGMLAALSAYRTTMPGLSVSESPTRGVGGVTSNNPDQS 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2683489 2685269 + MELO3C012086.2.1 Cme10g00425 339311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00425 365 MobiDBLite consensus disorder prediction 16 31 - -
Cme10g00425 365 MobiDBLite consensus disorder prediction 343 365 - -
Cme10g00425 365 PANTHER TRANSCRIPTION FACTOR TCP23 11 352 - -
Cme10g00425 365 ProSiteProfiles TCP domain profile. 74 128 IPR017887 -
Cme10g00425 365 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 11 352 IPR005333 GO:0003700
Cme10g00425 365 Pfam TCP family transcription factor 73 195 IPR017887 -
Cme10g00425 365 MobiDBLite consensus disorder prediction 1 87 - -
Cme10g00425 365 MobiDBLite consensus disorder prediction 32 68 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00425 - - - csv:101206263 629.787
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01292 Cme-Chr8:9353286 Cme10g00425 Cme-Chr10:2683489 8.72E-35 dispersed
Cme10g00425 Cme-Chr10:2683489 Cme10g00701 Cme-Chr10:4410767 5.29E-47 dispersed
Cme10g00786 Cme-Chr10:5105118 Cme10g00425 Cme-Chr10:2683489 9.63E-39 transposed
Cme10g00425 Cme-Chr10:2683489 Cme12g02008 Cme-Chr12:25710988 5.56E-61 wgd
Cme10g00425 Cme-Chr10:2683489 Cme02g01890 Cme-Chr2:25419111 4.06E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g894 . Blo16g01121 . Bda11g01222 Bpe13g01416 . . Bma15g00272 Cmo04g01729 Cmo18g01183 . Cma18g01160 . Car18g01068 Sed06g1538 . Cpe01g01458 Bhi07g01576 Tan04g1091 Cmetu10g1669 Lac13g0309 Hepe10g1732 . . Cla05g02451 Cam05g2637 Cec05g2670 Cco05g2708 Clacu05g2640 Cmu05g2494 Cre05g2607 . Cone19ag0952 . . Lsi04g00434 Csa05g02440 Chy10g00992 Cme10g00425 . . . Bda11g01222 . . . Bma06g00680 . . . . . Car04g01690 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g02231 . 45 265 TCP Transcription Factor Family AT5G23280 61.8 1.3e-63 240.0
Cme10g00786 . 93 315 TCP Transcription Factor Family AT5G23280 59.6 5.3e-60 228.0
Cme11g02537 . 65 328 TCP Transcription Factor Family AT2G45680 53.8 1.6e-65 246.9
Cme10g00425 . 71 165 TCP Transcription Factor Family AT3G47620 89.7 8.2e-41 165.2
Cme12g02008 CCT,ECH 37 137 TCP Transcription Factor Family AT3G47620 82.2 1.2e-39 161.4
Cme10g00701 . 46 165 TCP Transcription Factor Family AT3G47620 65.1 2.7e-36 150.2
Cme10g00701 . 46 147 TCP Transcription Factor Family AT1G69690 78.8 2.8e-37 152.9
Cme06g01771 . 8 241 TCP Transcription Factor Family AT3G27010 58.2 2.8e-58 222.6
Cme11g02340 . 36 270 TCP Transcription Factor Family AT3G27010 52.0 3.5e-53 205.7
Cme10g00786 . 63 313 TCP Transcription Factor Family AT5G08330 55.4 9.9e-64 240.4
Cme06g02231 . 31 264 TCP Transcription Factor Family AT5G08330 59.1 1.3e-60 229.9
Cme02g01824 CCT 49 148 TCP Transcription Factor Family AT5G60970 76.2 2.0e-39 160.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42049 PF03634 TCP 6.10E-38 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00425 Cme_Chr10 FPKM 12.99615 12.703214 7.405949 6.400117 13.736128 14.625279 14.056305 4.929446 5.580089 4.946633