Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme10g00425 | ATGATCATGGATGGTGAAAATGGGATCCGAAGACCTAATTTTCCATTACAATTGTTGGAGAAGAAAAAGGAAGAGGAAGAAGAACAACAACAACAACACCCATGTTCCTCCTCCGCAAACAACGGAGGAACAAAAACAACAACGACAATAACAACAACTCCAAATTCAAATCTTCAATCTTCTTCTTCGCCTAAGAAGCCACCTCCCAAAAGGGCCACCACCAAAGACCGTCACACGAAAGTCGATGGCCGTGGTCGTCGGATTCGGATGCCTGCCCTTTGTGCTGCTAGGGTTTTTCAACTCACTCGAGAGCTCGGTCACAAGTCCGACGGTGAAACTATTGAGTGGCTTCTACAACAGGCTGAGCCTGCCGTTATCGCTGCGACTGGTACTGGTACTATTCCAGCTAATTTTACTTCACTTAATATCTCTCTTCGTAGCTCTGGCTCCACCATCTCCGCTCCTTCTCATCTTCGGACGAGTTATTTCAGTCCCACTCAATTCGCCGTTAGAACGAGATCGGATCTTTGGGATAGAACCAACAATCATAATCATAATCTTGTTGATGATTCGTCTACATTCTTGAATTTCAATTCTTCTAGTTACGTGAACGTGTTCAAGCAAGATCAAGGTGGGATTGATGTAGTAGAGACGGGGAAAAAACGGCGGTCGGAGCAATCGGAATCGTCGTCAGAGAATTATATGGTTCAAACGAGTACCGGTTCTATTCCGGCGAGTCAAAGCAGTCAATTGCCGGCGACATTTTGGATGGTGACGAATCCTACCAATCAAGGGAGTGATCAGATGTGGACATTTCCGTCGGTGGGAAACAGCAGTATGTTAAGAGGGACGGGTGGCGGTGGTGGTGGCGGCGGAGGGTTTCATTTCATGAATCTGCCACCACCAATGGCACTTTTGCCAAGTGGGCAACAGTTGGGGACAGGGATCGGAGGTGGTGGTGGTCCGGCGACGGACAGCCACTTGGGGATGTTGGCGGCTCTAAGTGCTTATAGAACAACGATGCCGGGATTGTCAGTATCAGAATCTCCGACAAGAGGAGTCGGCGGCGTTACTTCTAATAATCCTGATCAATCATAG | 1098 | 47.91 | MIMDGENGIRRPNFPLQLLEKKKEEEEEQQQQHPCSSSANNGGTKTTTTITTTPNSNLQSSSSPKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRTSYFSPTQFAVRTRSDLWDRTNNHNHNLVDDSSTFLNFNSSSYVNVFKQDQGGIDVVETGKKRRSEQSESSSENYMVQTSTGSIPASQSSQLPATFWMVTNPTNQGSDQMWTFPSVGNSSMLRGTGGGGGGGGGFHFMNLPPPMALLPSGQQLGTGIGGGGGPATDSHLGMLAALSAYRTTMPGLSVSESPTRGVGGVTSNNPDQS | 365 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 2683489 | 2685269 | + | MELO3C012086.2.1 | Cme10g00425 | 339311 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme10g00425 | 365 | MobiDBLite | consensus disorder prediction | 16 | 31 | - | - | |
| Cme10g00425 | 365 | MobiDBLite | consensus disorder prediction | 343 | 365 | - | - | |
| Cme10g00425 | 365 | PANTHER | TRANSCRIPTION FACTOR TCP23 | 11 | 352 | - | - | |
| Cme10g00425 | 365 | ProSiteProfiles | TCP domain profile. | 74 | 128 | IPR017887 | - | |
| Cme10g00425 | 365 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 11 | 352 | IPR005333 | GO:0003700 | |
| Cme10g00425 | 365 | Pfam | TCP family transcription factor | 73 | 195 | IPR017887 | - | |
| Cme10g00425 | 365 | MobiDBLite | consensus disorder prediction | 1 | 87 | - | - | |
| Cme10g00425 | 365 | MobiDBLite | consensus disorder prediction | 32 | 68 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme08g01292 | Cme-Chr8:9353286 | Cme10g00425 | Cme-Chr10:2683489 | 8.72E-35 | dispersed | |
| Cme10g00425 | Cme-Chr10:2683489 | Cme10g00701 | Cme-Chr10:4410767 | 5.29E-47 | dispersed | |
| Cme10g00786 | Cme-Chr10:5105118 | Cme10g00425 | Cme-Chr10:2683489 | 9.63E-39 | transposed | |
| Cme10g00425 | Cme-Chr10:2683489 | Cme12g02008 | Cme-Chr12:25710988 | 5.56E-61 | wgd | |
| Cme10g00425 | Cme-Chr10:2683489 | Cme02g01890 | Cme-Chr2:25419111 | 4.06E-85 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 42049 | PF03634 | TCP | 6.10E-38 | No_clan | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme10g00425 | - | - | csv:101206263 | 629.787 |