Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00425 ATGATCATGGATGGTGAAAATGGGATCCGAAGACCTAATTTTCCATTACAATTGTTGGAGAAGAAAAAGGAAGAGGAAGAAGAACAACAACAACAACACCCATGTTCCTCCTCCGCAAACAACGGAGGAACAAAAACAACAACGACAATAACAACAACTCCAAATTCAAATCTTCAATCTTCTTCTTCGCCTAAGAAGCCACCTCCCAAAAGGGCCACCACCAAAGACCGTCACACGAAAGTCGATGGCCGTGGTCGTCGGATTCGGATGCCTGCCCTTTGTGCTGCTAGGGTTTTTCAACTCACTCGAGAGCTCGGTCACAAGTCCGACGGTGAAACTATTGAGTGGCTTCTACAACAGGCTGAGCCTGCCGTTATCGCTGCGACTGGTACTGGTACTATTCCAGCTAATTTTACTTCACTTAATATCTCTCTTCGTAGCTCTGGCTCCACCATCTCCGCTCCTTCTCATCTTCGGACGAGTTATTTCAGTCCCACTCAATTCGCCGTTAGAACGAGATCGGATCTTTGGGATAGAACCAACAATCATAATCATAATCTTGTTGATGATTCGTCTACATTCTTGAATTTCAATTCTTCTAGTTACGTGAACGTGTTCAAGCAAGATCAAGGTGGGATTGATGTAGTAGAGACGGGGAAAAAACGGCGGTCGGAGCAATCGGAATCGTCGTCAGAGAATTATATGGTTCAAACGAGTACCGGTTCTATTCCGGCGAGTCAAAGCAGTCAATTGCCGGCGACATTTTGGATGGTGACGAATCCTACCAATCAAGGGAGTGATCAGATGTGGACATTTCCGTCGGTGGGAAACAGCAGTATGTTAAGAGGGACGGGTGGCGGTGGTGGTGGCGGCGGAGGGTTTCATTTCATGAATCTGCCACCACCAATGGCACTTTTGCCAAGTGGGCAACAGTTGGGGACAGGGATCGGAGGTGGTGGTGGTCCGGCGACGGACAGCCACTTGGGGATGTTGGCGGCTCTAAGTGCTTATAGAACAACGATGCCGGGATTGTCAGTATCAGAATCTCCGACAAGAGGAGTCGGCGGCGTTACTTCTAATAATCCTGATCAATCATAG 1098 47.91 MIMDGENGIRRPNFPLQLLEKKKEEEEEQQQQHPCSSSANNGGTKTTTTITTTPNSNLQSSSSPKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRTSYFSPTQFAVRTRSDLWDRTNNHNHNLVDDSSTFLNFNSSSYVNVFKQDQGGIDVVETGKKRRSEQSESSSENYMVQTSTGSIPASQSSQLPATFWMVTNPTNQGSDQMWTFPSVGNSSMLRGTGGGGGGGGGFHFMNLPPPMALLPSGQQLGTGIGGGGGPATDSHLGMLAALSAYRTTMPGLSVSESPTRGVGGVTSNNPDQS 365
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 2683489 2685269 + MELO3C012086.2.1 Cme10g00425 339311
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00425 365 MobiDBLite consensus disorder prediction 16 31 - -
Cme10g00425 365 MobiDBLite consensus disorder prediction 343 365 - -
Cme10g00425 365 PANTHER TRANSCRIPTION FACTOR TCP23 11 352 - -
Cme10g00425 365 ProSiteProfiles TCP domain profile. 74 128 IPR017887 -
Cme10g00425 365 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 11 352 IPR005333 GO:0003700
Cme10g00425 365 Pfam TCP family transcription factor 73 195 IPR017887 -
Cme10g00425 365 MobiDBLite consensus disorder prediction 1 87 - -
Cme10g00425 365 MobiDBLite consensus disorder prediction 32 68 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01292 Cme-Chr8:9353286 Cme10g00425 Cme-Chr10:2683489 8.72E-35 dispersed
Cme10g00425 Cme-Chr10:2683489 Cme10g00701 Cme-Chr10:4410767 5.29E-47 dispersed
Cme10g00786 Cme-Chr10:5105118 Cme10g00425 Cme-Chr10:2683489 9.63E-39 transposed
Cme10g00425 Cme-Chr10:2683489 Cme12g02008 Cme-Chr12:25710988 5.56E-61 wgd
Cme10g00425 Cme-Chr10:2683489 Cme02g01890 Cme-Chr2:25419111 4.06E-85 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42049 PF03634 TCP 6.10E-38 No_clan Cme TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00425 - - csv:101206263 629.787