Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00433 ATGACAAGCAATGGGATGGCTTTTTTTCCAGCAAATTTCATGTTACAACCTTCCCATGAAGATCATGATCATCATCATCACCACTCTAATTCTCCTCCATCTCTCAACCCAATTCTACCTTCTTGCACACCTCAAGATTTTCATGGGGTTGCATCTTTTCTAGGAAAACGATCTATGTCATTTTCAGGGGCGGAAATGGTTGAAGAAGGGAATAACGGTGAGGATGAATTTTCTGATGATGGGTCACAGGCAGGTGAGAAAAAGAGGAGACTTAATATGGAGCAAGTTAAAACACTTGAGAAAAATTTTGAATTGGGGAATAAGCTTGAACCTGAGAGAAAAATGCAGCTTGCTAGAGCTCTTGGTTTACAGCCAAGACAGATTGCAATTTGGTTTCAAAACAGAAGGGCGAGATGGAAGACTAAACAACTTGAAAAAGACTACGATCTTCTCAAGAGACAATTTGAAGCTATCAAATCAGATAATGAAGCCCTCAAATCCCACAACCAAAAACTTCAAGCAGAGATAATGGCACTAAAAAGTAGAGAACCAACAGAATCAATCAACTTGAACAAAGAAACAGAGGGATCATGCAGTAACAGAAGTGAAAACAGCTCTGATAACATAAAATTAGACATATCAAGAACACCAGCCATTGATAGTCCTCATCAACAACATCCAACAAATAGGCCACTTTTTCCCACTTCTTCATCACTAAGGCCTCCAGCATTAGCTCAACTCTTTCAAACCTCATCAAGATCATCAGACCATCCACCAAAACAAATTGATAATCATCATCAAATCCCTAAAGAAGAAAGCAGCAGTTTGTCCAATATGTTCTGTGGAATGGATGACCACTCGGGGTTTTGGCCTTGGTTGGAGCAACAACATTTCAACTGA 900 39.56 MTSNGMAFFPANFMLQPSHEDHDHHHHHSNSPPSLNPILPSCTPQDFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNEALKSHNQKLQAEIMALKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQQHPTNRPLFPTSSSLRPPALAQLFQTSSRSSDHPPKQIDNHHQIPKEESSSLSNMFCGMDDHSGFWPWLEQQHFN 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2749165 2751595 + MELO3C012079.2.1 Cme10g00433 339319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00433 299 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Cme10g00433 299 MobiDBLite consensus disorder prediction 183 279 - -
Cme10g00433 299 SMART HOX_1 85 146 IPR001356 GO:0003677
Cme10g00433 299 CDD homeodomain 87 143 IPR001356 GO:0003677
Cme10g00433 299 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Cme10g00433 299 MobiDBLite consensus disorder prediction 65 87 - -
Cme10g00433 299 MobiDBLite consensus disorder prediction 190 257 - -
Cme10g00433 299 Pfam Homeodomain 87 140 IPR001356 GO:0003677
Cme10g00433 299 Pfam Homeobox associated leucine zipper 142 182 IPR003106 GO:0006355|GO:0043565
Cme10g00433 299 MobiDBLite consensus disorder prediction 17 42 - -
Cme10g00433 299 PRINTS Lambda-repressor HTH signature 113 122 IPR000047 GO:0003677
Cme10g00433 299 PRINTS Lambda-repressor HTH signature 122 138 IPR000047 GO:0003677
Cme10g00433 299 SUPERFAMILY Homeodomain-like 76 144 IPR009057 -
Cme10g00433 299 Coils Coil 134 182 - -
Cme10g00433 299 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 4 299 IPR045224 GO:0003700
Cme10g00433 299 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 4 299 - -
Cme10g00433 299 Gene3D - 79 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00433 Cme-Chr10:2749165 Cme12g01748 Cme-Chr12:24189271 5.26E-36 dispersed
Cme10g00433 Cme-Chr10:2749165 Cme09g00288 Cme-Chr9:2286250 5.83E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42051 PF00046 Homeodomain 3.00E-15 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00433 K09338 - csv:101221595 576.63