Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00438 ATGAAGACTTCCAGGGTTTCTTTCTCTTTTTGGTTTCCTGCTTTCATTTTTGCTGTTATCTTTCCATTTTCAACAGGGCAACTTCCTCCAAGCGAAACCAGGATTCTGTTTGAGATTCAAAAACTTCTGGAGTATCCTGTTGCTTTTCAGGGATGGTCAAATTGGACCAACTTCTGCTATTTACCTCCTTCTCCGTCACTCAAAATTGTCTGTTCTGGAAATCACATAACAGAATTAACTGTCATTGGAAACAAAAGCTCTCCTTCCAAAGCCCCAAAATCAGTTTCAGTGAGTTCCATCCCTTCTCCCCAGACTCTTTCAAATAGTTTTTCCATTGATTCCTTCTTCACTGTTCTCACAAAGCTTTCGAACCTGAGAGTCTTGTCATTAGTATCTTTGGGATTGTGGGGTCCTTTCCCTTCCAAAGTTAACAGGCTCTCGTCTTTGGAAGTGCTTAACATAAGCTCAAATTTTATCTATGGAGGCATCCCTACAACAATCTCAAAACTTCAAAGTCTCAAGAGCCTTGTTTTGGCTGACAATTTGCTCAATGGAAGTGTTCCAGATCTCAAAGGCCTTGCAGTTCTTGAAGAGCTGAATTTAGGACAGAATCAACTAGGACAAAAAGTTCCTTCTCTGGGAGGAACTCTTATGATTATTGTACTGAGAAAAAACTTATTCAGATCTGAAATCCCCTCAAGAATCTTGCAACTCAATAAGCTTCAGTTATTCGATATTTCCTACAATAAGTTTCTTGGGCCAATCCATGCCTCCCTCTTCTCTCTACCTGCAGTTCAGTATCTCAACCTAGCTTATAACCAATTAAGTGGAGCGCTCTCTGTTAACACAACTTGCAATAGAAACCTTAAGTTTGTAGATATTTCACACAACCTTCTGATAGGAAAATTACCATCTTGCATCAGACCAAATTCGTCAAATCGCACTGTAAATATTTCTTGGAACTGCTTGTCAAGTGGAAGCTCGAAGGATCAGCATACTTATTCCTATTGCCATAAGGAAGCAATGGCCGTGAAGCCTCCCGGTGACGTACAGAAACAGAAACTTAGCAGCAAACTGGGTCTCGTGCTCGCTGTCATTGGAGGCGCTGTCGGAATTTCAGGCGTTGTTCTGTTATTAGTTTATGCAATCATCCGAAACAGAAGAAGAAGAAGATTTGGAGAGACCAAATATGAGAAATCTACAGCTGATAAACTCTCTGTTCGTGGCTCTCCACTTCCTAACAGACATGTACCCCAAACAAGGCTACCAGCACTTGGGTTGCCGCCATATCGGGTCTTCACATTGGAAGAGATCGAAGACATCACAAGAAATTTCGACCCGTCAAACGTGGTCGCCAAAGAACCCCAAGCAAAGTATAAAGGGTGGTTGCCTGATGGTTCAGTGGTCCTGATCAGATGCTTTAAACGAAAGCAAAAACTTGTACCTCAAGCCTTAGCTCGACACATGGAAGAACTGCCAAATATGAGACATCGCCATTTGGTCAGTGTTCTTGGACACTGCACTTTCAGTCATCAAGATCAACTAAACCCAGCTACCACTGTCTTCGTTGTTAATGAATACATATCCAACGGCTCATTGAAGGATTGTCTTACAGATTGGAAAAGGAAGGATGCTCTGAAATGGCCACAGAGAATGGGAATAACCATTGGCATTGCTAGGGGAATACAGCATTTGCATACTGGAATGGCATCCGGCATCTTTGGGAACGATATCAATATTGATAGCATTTTGTTGGATGAGACGCTGTCTGCAAAAATAAGCAATTACAACATTCTCATGCCGCTAGAGAATGCAGAGACCGGGTTGAACGTGACAAAAAGAAGCGAGGATCCAGAGAAGGAAGATATCTTTCAATTTGGTGCTATTTTGCTGCAAGTCATCAATGGTAGACCGATCACAGCGACGAGTGAACTGGATGATCTGAAGATTGAGTTTGAAAGTGGCTTGGCAGAAGTACTGAAATTACGGGGGGTTATCGATCCTTCGATTCAGGGCTCTTTTGCATTTGATTCACTGAAAACCACAATTCAAATTGCCATCAATTGTCTCAGCAAAGATCCAAACAAGCGACCTTCAATTGAAGATGTACTCTGGAATTTGCAATACTCAATGCAAGTTCAAGAAGGATGGACAAGTAGTGGAAACCTCGGAGCTTTCATATAG 2184 41.94 MKTSRVSFSFWFPAFIFAVIFPFSTGQLPPSETRILFEIQKLLEYPVAFQGWSNWTNFCYLPPSPSLKIVCSGNHITELTVIGNKSSPSKAPKSVSVSSIPSPQTLSNSFSIDSFFTVLTKLSNLRVLSLVSLGLWGPFPSKVNRLSSLEVLNISSNFIYGGIPTTISKLQSLKSLVLADNLLNGSVPDLKGLAVLEELNLGQNQLGQKVPSLGGTLMIIVLRKNLFRSEIPSRILQLNKLQLFDISYNKFLGPIHASLFSLPAVQYLNLAYNQLSGALSVNTTCNRNLKFVDISHNLLIGKLPSCIRPNSSNRTVNISWNCLSSGSSKDQHTYSYCHKEAMAVKPPGDVQKQKLSSKLGLVLAVIGGAVGISGVVLLLVYAIIRNRRRRRFGETKYEKSTADKLSVRGSPLPNRHVPQTRLPALGLPPYRVFTLEEIEDITRNFDPSNVVAKEPQAKYKGWLPDGSVVLIRCFKRKQKLVPQALARHMEELPNMRHRHLVSVLGHCTFSHQDQLNPATTVFVVNEYISNGSLKDCLTDWKRKDALKWPQRMGITIGIARGIQHLHTGMASGIFGNDINIDSILLDETLSAKISNYNILMPLENAETGLNVTKRSEDPEKEDIFQFGAILLQVINGRPITATSELDDLKIEFESGLAEVLKLRGVIDPSIQGSFAFDSLKTTIQIAINCLSKDPNKRPSIEDVLWNLQYSMQVQEGWTSSGNLGAFI 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2796559 2799613 + MELO3C012075.2.1 Cme10g00438 339324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00438 727 Pfam Leucine rich repeat 148 206 IPR001611 GO:0005515
Cme10g00438 727 Gene3D Transferase(Phosphotransferase) domain 1 528 719 - -
Cme10g00438 727 SMART serkin_6 445 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00438 727 Gene3D Ribonuclease Inhibitor 217 340 IPR032675 -
Cme10g00438 727 PANTHER OS07G0166700 PROTEIN 7 723 IPR045272 GO:0004714|GO:0006468
Cme10g00438 727 SUPERFAMILY L domain-like 106 325 - -
Cme10g00438 727 SUPERFAMILY Protein kinase-like (PK-like) 423 707 IPR011009 -
Cme10g00438 727 Gene3D Ribonuclease Inhibitor 29 216 IPR032675 -
Cme10g00438 727 Pfam Leucine Rich Repeat 288 307 IPR001611 GO:0005515
Cme10g00438 727 ProSiteProfiles Protein kinase domain profile. 435 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00438 727 PANTHER BNAC05G10630D PROTEIN 7 723 - -
Cme10g00438 727 Pfam Protein kinase domain 480 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00438 727 Gene3D Phosphorylase Kinase; domain 1 427 516 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00438 - - - csv:101222534 1325.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01966 Cme-Chr8:24495385 Cme10g00438 Cme-Chr10:2796559 7.21E-149 dispersed
Cme10g00438 Cme-Chr10:2796559 Cme12g01599 Cme-Chr12:23271355 2.18E-109 dispersed
Cme10g00438 Cme-Chr10:2796559 Cme08g00910 Cme-Chr8:5986660 9.15E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g866 . . . . . Bpe10g00858 . Bma15g00250 . Cmo18g01192 . Cma18g01168 . Car18g01077 . Cpe09g00160 . Bhi07g01594 . . Lac13g0294 . . . Cla05g02463 Cam05g2650 Cec05g2685 Cco05g2719 Clacu05g2654 Cmu05g2506 Cre05g2622 Cone13ag0974 Cone19ag0964 . . Lsi04g00446 Csa05g02427 Chy10g00981 Cme10g00438 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012316 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65194 PF00069 Pkinase 8.00E-11 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00438 Cme_Chr10 FPKM 193.00264 236.251404 610.067993 627.61554 0.820639 0.528955 0.528786 3.483863 1.692183 2.15158