Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00442 ATGATCCAACACAAAGAGCTTATAGAAATCGCAAGGAAAGCACATCTCCTGAGTTTACAACCTATGGAGCAAGGAAAGGAGGTTAAGTATTCTGCATTGTCTAACTGCGGATCTTATTTCGAGCGCATACAATCTTCGAAGAAACTTCCGAAATACCTACAGGAGACACTGAATGATGCATTTTCTAGAATCCCAGTTTCGTCATTTCCTGGAGTCCCAGGAGGCAGAGTTATTGAGATTCCAGCAGACACAACAATTGCTAATGCTGTAAAAATTCTATCTGAGTGCAACATTTTATCAGCTCCTGTAATAAATCCAAAGGCAAAAGCAAATATGAACTGGAGAGAAAGATACCTTGGAATTGTAGATTATTCGGCCATTATCTTGTGGGTGTTGGAGAGTGCAGAACTTGCTGCAGCTGCTTTATCTGCTGGTTCAGCTACTGCTGTTGGAGTTGGTGCAGGAGCAGTTGGTGCTCTTGGAGCATTGGCATTAGGGGCGACTGGTCCGGTTGCAGTTGCAGGGATAGCTGCAGCAGCGGTTGGAGCTGCTGTGGCTGGTGGAGTTGCTGTTGACAAAGGAATCGGTAAAGATGCTCCAACAGCTGCTGATAATTTAGGAGAAGATTTTTACAAAGTCCTACTGCAAGAAGAACCGTTCAAATCAACAACAGTTGAGATGATATTGAAATCCTACCGCTGGGATCCATTTCTTCCTGTGACCCTAGATAATTCCATGCTATGTGTCTTACTACTACTTTCAAAATATAGATTGAGGAATGTACCTGTCATTGAATCAGGGAAACCTGAGATCAAGAATTACATAACTCAATCTGCAGTAGTTCAGGGTCTTGAAAGGTGTAAAGGAAGGGACTGGTTTGACTGTATATCTGCAAGACCTATTTCTGATTTGGGACTTCCTTTTGTGTCTTGTAAAGAGGTTATTAGCATCCAAAGCAACGAGTTGATATTGGAAGCTTTCAAACGAATGAGAGATAATCATATTGGTGGCCTTCCAGTTGTTGAGGGGCCAAAGAAAAGGATAGTGGGAAATATAAGTATAAGAGACATAAGATATTTACTGCTTAAACCTGAACTTTTCTCCAATTTCAGGAAGCTTACCGTTATGGATTTCATCAAAACAATTGTCACGTTGACTCACGAAATTGGGAAACTTGCCCCACCAATTACCTGCAGACTTGATTCAACTCTTGGCTCTGTTATCCATAGTCTTGCTTCCAAGTCAGTCCACAGGATCTATGTCGTAGCTGATGATGAAGAAGTTGTCGGGGTCATCACTTTAAGGGATGTGATCTCGTGCTTCATTTTTGAACCACCCAACTACATAATCAACCACTTCGGATTTTCTGCCGAAGAAATGTTGAACCAGTGA 1392 41.88 MIQHKELIEIARKAHLLSLQPMEQGKEVKYSALSNCGSYFERIQSSKKLPKYLQETLNDAFSRIPVSSFPGVPGGRVIEIPADTTIANAVKILSECNILSAPVINPKAKANMNWRERYLGIVDYSAIILWVLESAELAAAALSAGSATAVGVGAGAVGALGALALGATGPVAVAGIAAAAVGAAVAGGVAVDKGIGKDAPTAADNLGEDFYKVLLQEEPFKSTTVEMILKSYRWDPFLPVTLDNSMLCVLLLLSKYRLRNVPVIESGKPEIKNYITQSAVVQGLERCKGRDWFDCISARPISDLGLPFVSCKEVISIQSNELILEAFKRMRDNHIGGLPVVEGPKKRIVGNISIRDIRYLLLKPELFSNFRKLTVMDFIKTIVTLTHEIGKLAPPITCRLDSTLGSVIHSLASKSVHRIYVVADDEEVVGVITLRDVISCFIFEPPNYIINHFGFSAEEMLNQ 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2810793 2813584 - MELO3C012073.2.1 Cme10g00442 339328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00442 463 CDD CBS_pair_SF 312 438 - -
Cme10g00442 463 Pfam CBS domain 312 362 IPR000644 -
Cme10g00442 463 Pfam CBS domain 394 439 IPR000644 -
Cme10g00442 463 Gene3D - 296 444 IPR046342 -
Cme10g00442 463 SUPERFAMILY CBS-domain pair 57 282 IPR046342 -
Cme10g00442 463 Gene3D - 73 288 IPR046342 -
Cme10g00442 463 PANTHER BNAANNG38820D PROTEIN 24 462 - -
Cme10g00442 463 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 24 462 - -
Cme10g00442 463 SMART cbs_1 394 442 IPR000644 -
Cme10g00442 463 SMART cbs_1 236 285 IPR000644 -
Cme10g00442 463 SMART cbs_1 76 132 IPR000644 -
Cme10g00442 463 SMART cbs_1 313 362 IPR000644 -
Cme10g00442 463 ProSiteProfiles CBS domain profile. 308 368 IPR000644 -
Cme10g00442 463 ProSiteProfiles CBS domain profile. 389 449 IPR000644 -
Cme10g00442 463 SUPERFAMILY CBS-domain pair 295 447 IPR046342 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00442 - - - cmo:103489091 797.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g02061 Cme-Chr2:26601658 Cme10g00442 Cme-Chr10:2810793 3.46E-63 dispersed
Cme02g02062 Cme-Chr2:26601740 Cme10g00442 Cme-Chr10:2810793 3.46E-63 dispersed
Cme10g00442 Cme-Chr10:2810793 Cme11g00127 Cme-Chr11:1225962 6.77E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g862 . . . . . . Bma14g01634 . Cmo04g01714 Cmo18g01195 . Cma18g01170 . Car18g01079 Sed08g0035 Cpe09g00157 Cpe01g01449 Bhi07g01598 Tan04g1112 Cmetu10g1744 Lac13g0290 . . . Cla05g02467 Cam05g2652 Cec05g2687 Cco05g2721 Clacu05g2656 Cmu05g2508 Cre05g2624 . Cone19ag0967 . . Lsi04g00452 Csa05g02423 Chy10g00979 Cme10g00442 . . Bda07g01459 . Bpe11g01631 . . . . . . Cma04g01636 . Car04g01677 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009000 1 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 0 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00442 Cme_Chr10 FPKM 1.001812 1.129613 18.697147 17.322742 1.901411 2.641823 2.231514 9.200421 9.699254 10.178099