Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00443 ATGGCTAGACTTAGTCTGCTGCTAACATTGTCCTTGCTGGCTACTACTGCATTTGCTGACATTGGAGACTTCGATGACTACTGGAAAGCACGTGCTGCCGAGGCCGAACAAGCCGCCGCTGATGCCTATGAACCTAATCCTGAGACCATCGCCGACTCCCTCAATGCTGAAGTTGGCCAGGCATTGAGTGGAAGCAACAGTACAAGGAGGAATTTGAAGAAATATACAGGGCCATGTCGAGCCACTAATCCGATCGATCGGTGCTGGAGATGTGACCCCAATTGGGCCCAGAACAGGAAGAAGCTAGCCGATTGTGTTCTGGGTTTTGGCCGCAAGACCATTGGTGGAAAGTTGGGTCCATACTATGTAGTGAACGACTCGTCGGATTCGGACCTCATGAACCCGAAACCTGGGACTCTTCGTCATGCTGTAATCCAAAAGGGACCTCTGTGGATCACCTTCTCTACCAACATGGCCATTAGGCTCACCCAGGAGCTCATCGTGACTAGCGACAAGACCATTGATGCAAGAGGGGCCAATGTTCAGATTGCTTATGGCGCTGGCATTACTCTTCAGTACGTAAGAAATGTCATCATCCATGGTCTTCGTATCCATCACATTGTAGTTGGTAACGGAGGAATGATCAGAGACGCTGTCGACCATGTGGGTTTGAGGACTATGAGCGACGGCGACGGCATTTCCATCTTCGGCTCCTCCAATGTTTGGATTGACCATGTGTCCATGTCCAATTGTCAGGATGGTCTCATTGATGCTATTATGGGATCTACTGCCATAACTATATCCAATTGTCATTTCACTCACCACAATGAGGTGATGTTGTTTGGAGCAAGTGACGGATACTCAAATGATCAGATAATGCAAGTGACAGTAGCATTCAACCACTTTGGTCAAGGATTGGTGCAGCGAATGCCAAGATGTCGATGGGGCTTCTTTCATGTTGTCAACAATGACTACACTCATTGGCTTATGTATGCCATTGGTGGTAGCCAGCATCCCACCATTGTCAGCCAAGGCAATCGTTTCATTGCCCCTCCCAATGTATATGCTAAAGAGGTGACAAAGAGAGAGTACTCACCAGAGCAAGTTTGGAAAAGCTGGACATGGAGATCAGAGGGAGACTTGATGATGAATGGAGCATTCTTTGTTACCTCAGGTGATCAACGCAAGAGAAGACCCTTCTCAAGCAAGGATATGATCTCCTATAAACCAGGGACATACGTTAAAAGAATGACACGTTTTTCCGGCGCGCTCGCCTGCTTCGTTGGTCGCCCTTGCTAA 1299 48.19 MARLSLLLTLSLLATTAFADIGDFDDYWKARAAEAEQAAADAYEPNPETIADSLNAEVGQALSGSNSTRRNLKKYTGPCRATNPIDRCWRCDPNWAQNRKKLADCVLGFGRKTIGGKLGPYYVVNDSSDSDLMNPKPGTLRHAVIQKGPLWITFSTNMAIRLTQELIVTSDKTIDARGANVQIAYGAGITLQYVRNVIIHGLRIHHIVVGNGGMIRDAVDHVGLRTMSDGDGISIFGSSNVWIDHVSMSNCQDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDGYSNDQIMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNVYAKEVTKREYSPEQVWKSWTWRSEGDLMMNGAFFVTSGDQRKRRPFSSKDMISYKPGTYVKRMTRFSGALACFVGRPC 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2815338 2817428 - MELO3C012072.2.1 Cme10g00443 339329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00443 432 Gene3D - 82 425 IPR012334 -
Cme10g00443 432 PRINTS Pollen allergen Amb family signature 105 122 IPR018082 -
Cme10g00443 432 PRINTS Pollen allergen Amb family signature 129 154 IPR018082 -
Cme10g00443 432 PRINTS Pollen allergen Amb family signature 165 181 IPR018082 -
Cme10g00443 432 PRINTS Pollen allergen Amb family signature 229 250 IPR018082 -
Cme10g00443 432 PRINTS Pollen allergen Amb family signature 309 328 IPR018082 -
Cme10g00443 432 PRINTS Pollen allergen Amb family signature 331 350 IPR018082 -
Cme10g00443 432 PRINTS Pollen allergen Amb family signature 373 397 IPR018082 -
Cme10g00443 432 PRINTS Pollen allergen Amb family signature 403 426 IPR018082 -
Cme10g00443 432 PANTHER PECTATE LYASE 18-RELATED 8 432 IPR045032 GO:0030570
Cme10g00443 432 SMART amb_all 157 354 IPR002022 -
Cme10g00443 432 SUPERFAMILY Pectin lyase-like 83 423 IPR011050 -
Cme10g00443 432 Pfam Pectate lyase 167 348 IPR002022 -
Cme10g00443 432 Pfam Pectate lyase, N terminus 21 72 IPR007524 GO:0030570
Cme10g00443 432 PANTHER PECTATE LYASE 8 432 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00443 Cme-Chr10:2815338 Cme06g00410 Cme-Chr6:2629054 1.52E-167 dispersed
Cme10g00443 Cme-Chr10:2815338 Cme12g01753 Cme-Chr12:24206297 1.79E-137 wgd
Cme10g00443 Cme-Chr10:2815338 Cme03g01301 Cme-Chr3:22538065 0 wgd
Cme10g00443 Cme-Chr10:2815338 Cme04g01960 Cme-Chr4:27216012 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00443 K01728 - csv:101206497 821.617