Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00446 ATGGAGGTAATTGCTGAAGATGGGAAAGTTGAGTCTCGGGAAGTTAGGGAATCGAAGGGGAAGAAGAAGCAGAAAAACAACAAGGAACAAGTTGAAACCGTGGAAGAGGAGACTGGTTGTTGGATTGCTCTGAGGATTTTTGGTAGCTGCATTTCTTCGAGATCCAAAGTTGATAGTTCGATAAGTGGGACTAGTATCAACTATGCTGAAAGCAAGTCTACGGCTGATTCAAGTAGAGACCAACCAACTCCTCGAGAGATATCTTCAACAAACACAAGTATGAGTAATGGAGAGAGTAATTCATCGACTTCCAAACTAGAAGAGGAACTTAAAATTTCTCCTCATCTACGGAAATTTTCATTTAATGATCTTAAGTTGGCTACAAGGAACTTCAGACCCGAGAGTCTTCTTGGTGAGGGTGGTTTTGGTTGTGTTTTTAAGGGTTGGGTTGAAGAAAACGGAACTGCTCCAGTTAAACCTGGCACAGGACTCACTGTTGCTGTTAAAACCCTCAACCATGATGGTCTTCAGGGCCACAAAGAATGGATGGCTGAAGTTAATTTTCTCAGTGATCTCAAACATCCCAACTTGGTCAGACTTATTGGTTACTGCAATGAAGATGATCAAAGACTGCTTGTATATGAGTTCATGCCTAGAGGAAGCCTAGAGAATCATCTTTTCCGGAGATCTCTACCACTTCCGTGGTCTATTAGGATGAAAATTGCACTTGGTGCTGCCAAGGGTCTTGCTTTTCTTCATGAGGAAGCAAAAAGACCTGTGATATATCGTGATTTTAAAACATCCAACATTCTATTAGATGCCGAATACAATGCCAAGCTTTCTGACTTTGGACTTGCAAAAGATGGACCCGATGGAGATAAAACCCATGTCTCTACTCGGGTGATGGGAACATATGGCTATGCAGCTCCAGAATACGTTATGACTGGACATCTTACATCAAGGAGTGATGTTTACAGTTTTGGGGTGGTTCTTCTCGAAATGTTAACTGGCAGAAGATCCATGGATAAAAACCGTCCAAATGGTGAACATAACCTTGTGGAATGGGCACGGCCATACCTAGGAGAGAAAAAGAGATTCTATCGCTTGATAGACCCTAGGCTTGAGGGTCATTTCTCAATAAAAGGTGCTCAAAAAGCAGTACAATTAGCTGCTCAATGCCTTAGCCGAGATCAAAAGGTCAGACCCTTGATGAGTGAAGTTGTTGAAGCTTTGAAGCCTCTCCCAAACCTCAAGGACATGGCAAGTTCATCTTATTATTTTCAGACAATGCAAGCTGACCGTGTAAGATCCAGCCCCATGGCGAGAAATGGCTACCACACAGCGGCTGGACCAGCTCCAAAGAACGGGCAGCAACTACGCAGCTATTCAATCGCCAATGGTTCTCATGCTTCTCCATATCATCATCAGCAGCCCCATCCATCTCCAAAACCCAATGTCAAAGCCTAA 1467 43.35 MEVIAEDGKVESREVRESKGKKKQKNNKEQVETVEEETGCWIALRIFGSCISSRSKVDSSISGTSINYAESKSTADSSRDQPTPREISSTNTSMSNGESNSSTSKLEEELKISPHLRKFSFNDLKLATRNFRPESLLGEGGFGCVFKGWVEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLSDLKHPNLVRLIGYCNEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAKRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPDGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPYLGEKKRFYRLIDPRLEGHFSIKGAQKAVQLAAQCLSRDQKVRPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRVRSSPMARNGYHTAAGPAPKNGQQLRSYSIANGSHASPYHHQQPHPSPKPNVKA 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2831318 2835520 - MELO3C012069.2.1 Cme10g00446 339332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00446 488 PANTHER OS01G0588500 PROTEIN-RELATED 63 478 - -
Cme10g00446 488 SUPERFAMILY Protein kinase-like (PK-like) 107 411 IPR011009 -
Cme10g00446 488 MobiDBLite consensus disorder prediction 1 32 - -
Cme10g00446 488 ProSitePatterns Protein kinases ATP-binding region signature. 137 169 IPR017441 GO:0005524
Cme10g00446 488 Gene3D Phosphorylase Kinase; domain 1 90 216 - -
Cme10g00446 488 MobiDBLite consensus disorder prediction 437 488 - -
Cme10g00446 488 CDD STKc_IRAK 137 414 - -
Cme10g00446 488 MobiDBLite consensus disorder prediction 454 475 - -
Cme10g00446 488 MobiDBLite consensus disorder prediction 69 103 - -
Cme10g00446 488 MobiDBLite consensus disorder prediction 69 108 - -
Cme10g00446 488 Gene3D Transferase(Phosphotransferase) domain 1 217 433 - -
Cme10g00446 488 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 63 478 - -
Cme10g00446 488 ProSiteProfiles Protein kinase domain profile. 131 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00446 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Cme10g00446 488 SMART serkin_6 131 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00446 488 Pfam Protein tyrosine and serine/threonine kinase 135 411 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00305 Cme-Chr2:2514000 Cme10g00446 Cme-Chr10:2831318 4.04E-103 dispersed
Cme02g00352 Cme-Chr2:2910613 Cme10g00446 Cme-Chr10:2831318 1.62E-137 dispersed
Cme04g00046 Cme-Chr4:311634 Cme10g00446 Cme-Chr10:2831318 1.34E-117 dispersed
Cme04g02784 Cme-Chr4:32938738 Cme10g00446 Cme-Chr10:2831318 5.03E-59 dispersed
Cme07g01508 Cme-Chr7:20975634 Cme10g00446 Cme-Chr10:2831318 5.55E-135 dispersed
Cme08g02102 Cme-Chr8:26598899 Cme10g00446 Cme-Chr10:2831318 2.03E-62 dispersed
Cme10g00446 Cme-Chr10:2831318 Cme11g01308 Cme-Chr11:19865237 6.48E-158 dispersed
Cme11g01312 Cme-Chr11:19925436 Cme10g00446 Cme-Chr10:2831318 3.23E-99 dispersed
Cme02g01178 Cme-Chr2:16944513 Cme10g00446 Cme-Chr10:2831318 3.42E-178 transposed
Cme03g01826 Cme-Chr3:26647838 Cme10g00446 Cme-Chr10:2831318 4.78E-57 transposed
Cme05g00042 Cme-Chr5:302131 Cme10g00446 Cme-Chr10:2831318 1.16E-140 transposed
Cme05g01875 Cme-Chr5:27517207 Cme10g00446 Cme-Chr10:2831318 8.37E-177 transposed
Cme10g00446 Cme-Chr10:2831318 Cme09g00290 Cme-Chr9:2307388 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65195 PF07714 PK_Tyr_Ser-Thr 1.20E-46 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00446 - - csv:101203209 929.858