Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00456 ATGGGTCGGAAGAGAGATAAACCCTACCCTTCCTCCCACCTTCCTACCTCTGCCGCTAAGAGGCGACGCCCTCCGCCGTCTACGGTGGACGATGATTTGGAAAAGCCCGTGTCTAAACCTGCGCCACCGCTTGCCCTAGTCGTCGTTGACCTTCCTTCACAATGTTCGGTCCTTGACTTGAAGTCCCGGTTTGAGATCTACGGATCCATTTCCCGCATCCGAATCGACCGTGATTGTGTTGGCTACATCACTTATCGCACTAAAGACTCCGCCGATGCTGCCATGACCGCTGCCCTTGATCCCTCCTTCGCCTTCACTATTGATTCCAAAAAGGTTCAGGTACTATGGGCGAATGATCCTCAAGTCCAATGGCGACAAGGGATTAACGTTGGTGTTAACAAGAATAAGGAATTATCTTCAAAGCTCTTGCGGGCAGAGGTGCCACTAAGCAGACATGGAAGAAGCAATAAGCTTGCTTCAACCATTGTCAACCCCAGAAGAAGCAACAGCTCTTCAAGGTCAGATGTGCCTTTCAGGGGCAGAGAAGTTGTTGCTTATGATGATATTCTCTAA 573 50.09 MGRKRDKPYPSSHLPTSAAKRRRPPPSTVDDDLEKPVSKPAPPLALVVVDLPSQCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2893562 2894910 + MELO3C012060.2.1 Cme10g00456 339342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00456 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 96 IPR000504 GO:0003723
Cme10g00456 190 SUPERFAMILY RNA-binding domain, RBD 23 129 IPR035979 GO:0003676
Cme10g00456 190 Gene3D - 17 181 IPR012677 -
Cme10g00456 190 CDD RRM_SF 46 114 - -
Cme10g00456 190 SMART rrm1_1 45 115 IPR000504 GO:0003723
Cme10g00456 190 MobiDBLite consensus disorder prediction 1 38 - -
Cme10g00456 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 119 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00456 - - - csv:105435567 365.155
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g844 . . . . . . . . Cmo04g01704 . . . . . . . Cpe01g01438 Bhi07g01617 . . Lac13g0273 Hepe10g1709 . . Cla05g02480 Cam05g2664 Cec05g2698 Cco05g2733 Clacu05g2666 Cmu05g2520 Cre05g2635 . Cone19ag0975 . . Lsi04g00470 Csa05g02409 Chy10g00970 Cme10g00456 Blo06g00894 . . . . . . . . . . Cma04g01626 . Car04g01667 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013480 1 1 1 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00456 Cme_Chr10 FPKM 0.105613 0.186474 5.904582 6.529416 0.715543 0.51195 0.577134 208.119247 214.984009 198.879364