Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00457 ATGAATGATCCCCAACTAAAGGAAGACGACGTGGAGCAAGAGATGTGGAGTTGGGGGGCAGGAACTGACGGCCAGCTCGGCACCGGCCGACTCGAGGATAACCATCTCCCCCAACTCGTGCGAACTCCGTCACTCTCCTCCGTCCCTGCCATCTCATTCCTCTCCTGCGGTGGCGCTCATGTCATCGCTTTGACTGCCGGTGGTGGGGTGCTTACTTGGGGAAGAGGCAATTCAGGGCAGTTGGGGCTGGGAGACATGATAAGCAGCTTACACCCTAAGCCTGTGATGAGGCTGGGGAGCTACATCATAACCCAAGTTTCTGCTGGATGGAGCCATTCTGGTTTTGTTTCAGATGAGGGAAAGCTTTATACTTGTGGGGATGGCTCATTTGGGCAGTTAGGGCATGGTGATTACCATTTACGTTGCTTCCCTGATGAGGTCCTGTTTTTCTCTGATAAACATGTTGATCAGATTGCGTGTGGGATGCGCCACTCGCTTGCATTGTTCTTCTCAAATTTTGACAATGATGATGATGATGATGCAGGCTGTTCTGGTGAGCAAGTTTACGGATTTGGAGCTGGGAAACGGGGTCAATTGGGTATCTCTAAGAAGATTCAGACTGTTAATCTTCCCATACTTTCTTCCGAGTTGGAAGCTGCTGAAATAGTTGGCATAGCTGCTGGTGGAGATCATAGTGCTGCTTTATCCACTGAAGGGCATCTCTACACTTGGGGAAGGGGATTCAAGAGCAATTCAGATGTATATTCTCCTCAACATCTACCTTCGCCTTCATCGTTCAGTAAAGTTGCCCTTGGATGGAATCATGCACTAGTGTTAACTGGCGATTTCAAGGAAGATAATTTCCAAGCAATCCCTGCTCTTAGTGGAATAAAAGTTTTGGACATTGCAGCTGGGGCCGAGCATTCTGTAATTGTTACAGGCATGGTTTGTGAAGTTGTTGAGGATGGAGGTGTAAAGACTTGGGGTTGGGGGGAGCATGGTCAGCTTGGTTTGGGAGATACATGTGACCACACCAATCCACAAACGGTGAATCTAAACCTCAAACTTGAGAGTACTGCTTATGACGTCAAGGTCTATTGTGGCAGTGGCTTTACAGTTGCCGTTGCAACATCCAATCTCCGCAATTGA 1149 48.48 MNDPQLKEDDVEQEMWSWGAGTDGQLGTGRLEDNHLPQLVRTPSLSSVPAISFLSCGGAHVIALTAGGGVLTWGRGNSGQLGLGDMISSLHPKPVMRLGSYIITQVSAGWSHSGFVSDEGKLYTCGDGSFGQLGHGDYHLRCFPDEVLFFSDKHVDQIACGMRHSLALFFSNFDNDDDDDAGCSGEQVYGFGAGKRGQLGISKKIQTVNLPILSSELEAAEIVGIAAGGDHSAALSTEGHLYTWGRGFKSNSDVYSPQHLPSPSSFSKVALGWNHALVLTGDFKEDNFQAIPALSGIKVLDIAAGAEHSVIVTGMVCEVVEDGGVKTWGWGEHGQLGLGDTCDHTNPQTVNLNLKLESTAYDVKVYCGSGFTVAVATSNLRN 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2895636 2898823 + MELO3C012059.2.1 Cme10g00457 339343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00457 382 PANTHER OS01G0777800 PROTEIN 15 370 - -
Cme10g00457 382 Pfam Regulator of chromosome condensation (RCC1) repeat 322 375 IPR000408 -
Cme10g00457 382 Pfam Regulator of chromosome condensation (RCC1) repeat 68 115 IPR000408 -
Cme10g00457 382 Pfam Regulator of chromosome condensation (RCC1) repeat 119 168 IPR000408 -
Cme10g00457 382 Pfam Regulator of chromosome condensation (RCC1) repeat 15 64 IPR000408 -
Cme10g00457 382 Pfam Regulator of chromosome condensation (RCC1) repeat 187 235 IPR000408 -
Cme10g00457 382 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 158 168 IPR000408 -
Cme10g00457 382 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 120 171 IPR000408 -
Cme10g00457 382 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 186 238 IPR000408 -
Cme10g00457 382 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 68 119 IPR000408 -
Cme10g00457 382 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 15 370 - -
Cme10g00457 382 PRINTS Chromosome condensation regulator RCC1 signature 15 31 IPR000408 -
Cme10g00457 382 PRINTS Chromosome condensation regulator RCC1 signature 106 122 IPR000408 -
Cme10g00457 382 PRINTS Chromosome condensation regulator RCC1 signature 228 246 IPR000408 -
Cme10g00457 382 PRINTS Chromosome condensation regulator RCC1 signature 68 84 IPR000408 -
Cme10g00457 382 PRINTS Chromosome condensation regulator RCC1 signature 122 136 IPR000408 -
Cme10g00457 382 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 378 IPR000408 -
Cme10g00457 382 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 225 235 IPR000408 -
Cme10g00457 382 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 13 67 IPR000408 -
Cme10g00457 382 SUPERFAMILY RCC1/BLIP-II 13 282 IPR009091 -
Cme10g00457 382 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 239 282 IPR000408 -
Cme10g00457 382 Gene3D - 285 380 IPR009091 -
Cme10g00457 382 Gene3D - 9 284 IPR009091 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00457 - - - csv:101206976 675.626
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00457 Cme-Chr10:2895636 Cme03g00380 Cme-Chr3:5277130 3.01E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g843 . . . . . . Bma14g01622 . . Cmo18g01205 . Cma18g01183 . Car18g01091 . Cpe09g00147 . Bhi07g01619 . . . . . . Cla05g02481 Cam05g2665 Cec05g2699 Cco05g2734 Clacu05g2667 Cmu05g2521 Cre05g2636 Cone13ag0985 . . . Lsi04g00471 Csa05g02408 Chy10g00969 Cme10g00457 . Blo11g00760 Bda07g01457 . Bpe11g01629 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008999 1 4 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00457 Cme_Chr10 FPKM 16.993795 18.555948 16.930765 15.941805 8.115936 7.76867 7.639737 1.050672 1.079531 1.110193