Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00467 ATGGAGTTCTTCACCTTCTTCAAATCCGTCAAACTCCGAAGCCACCTCCACAAATACTTAACCGCCACTCACGACCACCAAACCGTCCGCCAAACCACCAACCCCTCCGCCACCGGAACCATTTGGGCAATCGAATTCGTCGAAGGAAAAACCGATTCCATCCGCCTCCGTAGCCGCCATGGAAACTACCTCTCTGCCACTGACCTCAATTTTCTCCTCGGCGCGACCGGGAGGAAGGTAATTTGCCAAACTAAGCACGACGCGGCCTGGAGTTGCGTCGAGTGGGAGCCTGTACGCGACGGCGATCGGGTGAAATTGATGAGTTGGTGCGGCAGTTATTTGAGAGGCAACGGCGCTATGCCGCCATGGAGGAACTCCGTTACTCATGACGAGCCGCGATTCTCTTCCACTAAGGGATGGATTTTGTGGGACGTTGAACCGGTTGTTGAAATTCCTAACTATTGTCTGTTCATGACTCGAAGGTCTATTTCTACCCTTTCTTCTTCTTCTTCTAAGGATTCCGAACACTTTTCCGTCTCCGGGAAACGTTCTCCGTCCACCCCAAAATCGGTTCGCCGATCCTCTACGTTACAGATCAAATCTTTTTCCTATAACAACCTGCGATCTAACACGGATTTCTTCCACAACCTCAAGACTGTCCGCCTCCGCAGCCATCACAACAAGTACCTTGTTGCTGATGACGATCAGAACTCAGTCAACCAAGAACGTAGCGGGTCCTCCAAAAATGCTCATTGGTCCGTTGAGTTTCCATTCAGCAAAAGGTCTAACTTTACCATCCGACTCAAAAGCTGCTATGGTAAGTACCTGACTGCCAGCAATCAACCTTTCTTGCTTGGAATGACCGGCCGAAAAGTGCTTCAGACCCTTCCTCGACGGCTAGATTCATCCATTGAGTGGGAACCCGTTAGAGAAGGGGCGCACGTCAAGTTCAAGACCTGTAATGGGAACTTCTTAAGAGCCAATGGGGGTCTACCGCCATGGCGTAATTCGGTCACTCATGATATTCCGAGTCAAACCGCCACACAAGATTGGATCCTCTGGGACATTGATGTTGTTGAGATTCGGGTTCAGTTTTTGAGTCATAGAACTCCCACAATTGAGCATGTGGATTCTCTAGATTTCAATCCCAGCTCACCCGCTTCTGCCTCTGGAAAATGGGCCCATTACTCTAGACTTGAGTATACTAATTCGACCGTTAGTTTACCTCCCAAATCTGAAGGAAGGACCATTTACTATCATGTGGCTGACGAAAGTGGAGATATAGATAAATATACAATGGAGGGTTCTTCTTTTACATTCAAAGGAAATGGGGTGGAGGAACTGACTCGCAAATTGAAGGAAGAAATAGGATTTGAAGGTATCATTGTGTGTACTCGCAATCCATTGAATGGGAATCTTTATCCTCTTCGCCTGCAACTTCCTCCGAACAACGCAATCATGCATGTGGTTGCCGTTCTTGAATCATCCAAATGTGAGATTTTCAAACCCGTTTTTTGTTGA 1521 47.86 MEFFTFFKSVKLRSHLHKYLTATHDHQTVRQTTNPSATGTIWAIEFVEGKTDSIRLRSRHGNYLSATDLNFLLGATGRKVICQTKHDAAWSCVEWEPVRDGDRVKLMSWCGSYLRGNGAMPPWRNSVTHDEPRFSSTKGWILWDVEPVVEIPNYCLFMTRRSISTLSSSSSKDSEHFSVSGKRSPSTPKSVRRSSTLQIKSFSYNNLRSNTDFFHNLKTVRLRSHHNKYLVADDDQNSVNQERSGSSKNAHWSVEFPFSKRSNFTIRLKSCYGKYLTASNQPFLLGMTGRKVLQTLPRRLDSSIEWEPVREGAHVKFKTCNGNFLRANGGLPPWRNSVTHDIPSQTATQDWILWDIDVVEIRVQFLSHRTPTIEHVDSLDFNPSSPASASGKWAHYSRLEYTNSTVSLPPKSEGRTIYYHVADESGDIDKYTMEGSSFTFKGNGVEELTRKLKEEIGFEGIIVCTRNPLNGNLYPLRLQLPPNNAIMHVVAVLESSKCEIFKPVFC 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2950896 2954528 - MELO3C012050.2.1 Cme10g00467 339353

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00467 506 SUPERFAMILY Actin-crosslinking proteins 10 146 IPR008999 -
Cme10g00467 506 Pfam Domain of unknown function (DUF569) 212 354 IPR007679 -
Cme10g00467 506 Pfam Domain of unknown function (DUF569) 1 143 IPR007679 -
Cme10g00467 506 SUPERFAMILY Actin-crosslinking proteins 219 359 IPR008999 -
Cme10g00467 506 MobiDBLite consensus disorder prediction 167 194 - -
Cme10g00467 506 Gene3D - 219 341 - -
Cme10g00467 506 PANTHER CROSS-LINKING PROTEIN, PUTATIVE (DUF569)-RELATED 1 189 - -
Cme10g00467 506 PANTHER CROSS-LINKING PROTEIN, PUTATIVE (DUF569)-RELATED 206 497 - -
Cme10g00467 506 PANTHER ACTIN CROSS-LINKING PROTEIN (DUF569) 206 497 - -
Cme10g00467 506 PANTHER ACTIN CROSS-LINKING PROTEIN (DUF569) 1 189 - -
Cme10g00467 506 Gene3D - 6 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00467 - - - csv:101205876 927.932
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01311 Cme-Chr3:22632836 Cme10g00467 Cme-Chr10:2950896 4.60E-162 dispersed
Cme04g01956 Cme-Chr4:27192941 Cme10g00467 Cme-Chr10:2950896 3.14E-149 dispersed
Cme10g00465 Cme-Chr10:2945074 Cme10g00467 Cme-Chr10:2950896 5.83E-42 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g835 . Blo16g01138 Bda01g02249 Bda11g01241 Bpe13g00469 . . Bma15g00173 Cmo04g01696 Cmo18g01211 . Cma18g01191 . Car18g01098 . Cpe09g00140 Cpe01g01431 . . . . . . . . . . . . . . Cone13ag0988 Cone19ag0981 Cone8ag0625 Cone12ag0608 . Csa05g02398 Chy10g00958 Cme10g00467 Blo06g00892 . . Bda11g01241 . . Bma01g00078 Bma06g00656 . . . Cma04g01618 . Car04g01660 . . Cpe07g00237 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000505 4 4 2 5 3 3 5 3 3 4 3 3 5 4 4 5 3 4 5 3 4 4 3 4 3 3 3 6 5 2 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00467 Cme_Chr10 FPKM 16.34157 15.850579 26.344965 27.148548 22.86577 21.969694 23.676073 42.610237 42.419216 38.241581