Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00468 ATGCCTTCTCCATCTCCCCTTTTTACCATTTCCGCCATTCTTCTCTTCTCCCTTCTCTTCCCCGTTCACTCTTCTTGTCCACCTTTCTCTTCCCAACCCCTTTTCCCCTTTTCCTCTGTTTCCGGTCATGGCCATCCTTCTTTTCAGGTCCATTGCTCTTCTCCTCACTCTCTTATTTCCATTAATGGTCTTTCCTTTTCTCTTCTAAGTTTCAATATCTCCTCCACCACTCTCCTCCTTTCTCCTCTTCCACTTAATCTCACTCCCACTCCTAAACAATCCAATCATTCCTGTTTTTCTCTTCGTTCTTCTTCTATTCCCACCCGTTCCATTGATTTCTCTGGCTCCCCTTTTCGAATCTCAGATGGGTATTGTTCTAGACTCTCTCTTCTTCGTCCCTGTTCGCCTCCTCATCTACCCAATTGCAGTCATTGCCCTTGGGAGTGTAATCTTATCAAGAAACCGGTTAATTTGCTCCATGGATGCGGCGTTGAGCGGCAGTCTGTGTCGGAGCAAGGTTGTCAAGAGGAGGTTTTGGAGTATTTGGATAGAATTCTTAGATTGGGGTTTGAAGTTGAGTGGGACAAAGATCAGGACCCTTACTTTATTAAGTGTAATGATTGTGAAGCTAACAAAGGTGTTTGTGGGTTCAATTCTTCAGACCCAGATAGGAAATTCATTTGCTATTATACTCGAACTCGATACTCATACCCTAATAGAATCGCGATTCTGTCCTCAGTTTTTGCATTGATGTGCTTGTTATTGGTTATTGCGGTGATGTTGGCTTTTTTCAGGTCCAGATGGTTGAGATCCTTCGCCATTGAAGTTGACCCAACAGCTCAGTTCCTTAGCCGTCACCGTTCACCTAATCTTCTACCACCTGTTTTCCCTTACGAAGAACTTGAATCCTCAACTAATCGATTCGACCCAAAGAGGAAACTGGGCGACGGTGGATTTGGGTCTGTTTATTTGGGTCAGCTCAACGATGGTCGACTAGTGGCCGTTAAGTATCTTCACAAGCATCACGCCGCCGCCACTGCCCCCTCCGGCAAGGCTTTCTTCACCAAATCGTTCTGTAACGAAATCTTGATTCTTTCTTCGATTAATCACCCAAATCTCGTTAGGTTACATGGGTATTGTAGTGATCCAAGAGGGCTTATTCTAGTTTATGATTATGTTCCAAATGGGACTCTCGCCGATCATCTCCATGGCCCTAAATGCACGTACCGGAAGGGATCACTGTCTTGGCAAGTGAGGATTGACATTGCTCTGCAAATCGCCATGGCTATGGAGTATTTGCATTTCTCTGTTGTACCGCCGATTGTTCACAGAGACATCACATCTTCTAATATTTTTGTGGAGAAAGATATGAGAATCAAAGTTGGGGATTTTGGGCTTTCAAGGTTGTTGGTTTTCTCCGATACGACGTCATCTTCATCTGGGTATGTCTGTACCGGTCCTCAGGGGACACCAGGCTACTTGGATCCAGATTACCACCGGTCGTTCCGATTGACGGAGAAAAGTGATGTGTACAGCTTCGGAGTGGTGTTGTTGGAGCTGATTTCTGGTTTGAAAGCAGTGGATCAGAGTCGAGAGAGAAGAGAAATGGCGTTAGCCGATCTGGTAGTGTCGAAGATTCAAATGGGTCAGCTTCATCAGGTGGTGGACTCTGTTTTGGGCGTCGACGGTGAGGTAATCGACGGCGTTGAGGCCATGGCGGAGTTGGCTTTCCGATGCGTTGCGGCGGACAAAGACGACCGCCCTGACGCGAAGGAGATTGTGGAGGAGCTCCGGCGGATTCGGAACTGCACACGTGGAGGGGTCCGGTCGTCGATTTCAAATGTGAGTGCTGACGCGGCTAGAAGTTGA 1869 46.92 MPSPSPLFTISAILLFSLLFPVHSSCPPFSSQPLFPFSSVSGHGHPSFQVHCSSPHSLISINGLSFSLLSFNISSTTLLLSPLPLNLTPTPKQSNHSCFSLRSSSIPTRSIDFSGSPFRISDGYCSRLSLLRPCSPPHLPNCSHCPWECNLIKKPVNLLHGCGVERQSVSEQGCQEEVLEYLDRILRLGFEVEWDKDQDPYFIKCNDCEANKGVCGFNSSDPDRKFICYYTRTRYSYPNRIAILSSVFALMCLLLVIAVMLAFFRSRWLRSFAIEVDPTAQFLSRHRSPNLLPPVFPYEELESSTNRFDPKRKLGDGGFGSVYLGQLNDGRLVAVKYLHKHHAAATAPSGKAFFTKSFCNEILILSSINHPNLVRLHGYCSDPRGLILVYDYVPNGTLADHLHGPKCTYRKGSLSWQVRIDIALQIAMAMEYLHFSVVPPIVHRDITSSNIFVEKDMRIKVGDFGLSRLLVFSDTTSSSSGYVCTGPQGTPGYLDPDYHRSFRLTEKSDVYSFGVVLLELISGLKAVDQSRERREMALADLVVSKIQMGQLHQVVDSVLGVDGEVIDGVEAMAELAFRCVAADKDDRPDAKEIVEELRRIRNCTRGGVRSSISNVSADAARS 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2959367 2961281 + MELO3C012049.2.1 Cme10g00468 339354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00468 622 CDD STKc_IRAK 314 600 - -
Cme10g00468 622 Gene3D Phosphorylase Kinase; domain 1 282 392 - -
Cme10g00468 622 SUPERFAMILY Protein kinase-like (PK-like) 288 597 IPR011009 -
Cme10g00468 622 Pfam Protein kinase domain 310 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00468 622 ProSitePatterns Protein kinases ATP-binding region signature. 314 336 IPR017441 GO:0005524
Cme10g00468 622 ProSiteProfiles Protein kinase domain profile. 308 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00468 622 Pfam Wall-associated receptor kinase C-terminal 171 231 IPR032872 -
Cme10g00468 622 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 17 608 IPR045274 GO:0007166
Cme10g00468 622 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.5 17 608 - -
Cme10g00468 622 ProSitePatterns Tyrosine protein kinases specific active-site signature. 441 453 IPR008266 GO:0004672|GO:0006468
Cme10g00468 622 Gene3D Transferase(Phosphotransferase) domain 1 393 614 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00468 Cme-Chr10:2959367 Cme12g01858 Cme-Chr12:24854691 1.48E-90 dispersed
Cme10g00468 Cme-Chr10:2959367 Cme10g00237 Cme-Chr10:1558148 3.68E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65196 PF00069 Pkinase 3.70E-44 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00468 - - csv:101206111 1191.79