Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00472 ATGGATAGTTTTCACCTGCAATGGGTTGCTGTTTTGATCTCCATTATCACCCTTTCTGAAGCTTGCCATCCTGCAGATTGGAAAGGCCTAACCAGTTTCAAGTCTGGAATTTCCATTGACACTTCGGGTAGGCTGGCAAAATGGGTGGGACAAAACTGTTGTGATTGGGAAGGAGTTCGTTGTCATAACATTACAGGTAGAGTCAAAGAAATCAATTTGCCTGGTTTCATATCCACTGCTGATCTCCCCTTTCAGTCTGAGATGAGAGGTTTTATTTCACCTTCAATAACACTGCTTAATGCCGTTGAGATTATTGATCTTGGAGGACTGCTTGGCCTCGGTGGAACAATCCCTTCGTTTATTGGTTTGCGTCTTCACAACCTGCGGAAGCTCTATCTTTATGGAAACAAGCTGAGAGGTCCACTTCCAGAAAGTATAGGTAAGCTTCTGAAACTTGAAGAACTTGCCGTGCATGATAATAGGCTGTCTGGTTCACTCCCAGCAATTTTGGGTAGTCTCAAGACTCTCCATAGCCTTCTTCTATATGGGAATCGGTTTTCGGGTGCAATACCGGATTCGTTTGCAGATCTTACTAACTTAGTTCAGATGGATTTACACAGCAACTCATTAGTTGGTCATATACCTGATAGAATTGGTCAGTTGCAGACGTTGAAAGAGCTTGATCTTTCAAACAACTTCTTGAGCGGGAAAATTCCCCTTTCCTTGAACAATTTGCCAGGTCTTTCGGTTTTGTATTTGGATAATAACAAACTTGAGGGACCAATTCCATTTGCATCAGTTTCTGGTAAAATCTCTTCTTCTCTTGCTTTTCTTAGACTGAATGACAACCGTTTAAGTGGTCCTATTCCTCAAAGTTTTGGAGAACTTGTCTGTCTCAAAAGAGTTTCTCTTTCGAACAACAAACTTGAGGGAACAATTCCTTCTTCTTTAGGGAGATTATCATCTTTATCAGAGTTGTATCTCGACCGCAACCGATTCTCCGGCCAAATACCGAAATCACTTGGACAGCTGTCTCAGCTCATTCTCCTGAATCTCTCTCACAATTTCATCAAAGGGCCATTACCTGAGATGTCATCTCTTCAAAATATTCAAACCATTGATCTTTCTTATAACCTTCTGAACCTGTCCTCCATTCCCCAATGGCTTTCAAAACTGCCATCTCTTTCAAAAATCTATCTTGCTGGGTGTGGTATCCATGGCCAAATTCCGGAGTTCTTGCGAACAACTCCAAGCCCGATACAAGAACTAGATCTTTCCCACAACCATCTAACTGACAAAATTCCAGAATGGATTGGATGCCTCACTCAGCTCTATTCCCTAAAACTATCAGAAAACTCACTGATCTCCCAGATCCCCAATTCCATTACAAATTTACAGGACTTGGGTGTGCTCGATCTTCATTCAAACAAGTTAACAGGCAACATACAGCAGATCTTCAAGATAAGCCACAGATTTCCAGACGATTCTTTGACATACATTGATCTTTCAGACAATAGGTTTTCTTGGGACTTCTATCAAACAGATATCGGGCAACAACCTGGGATCCAGTTTCTGAATTTGTCGAATAACAATCTGAAAGGAAGATTACCCACTTCAATCGGAGCATTAAGATCAATACAAACCCTGGATTTGAGCCGTAACAATTTGGGCTTCGACTTGCCAGAGACCATAGTGAATGCAAAGCAATTAGAGACGCTGAAGCTGCAAAGAAACCATTTTACAGGAAGAATACCGAAAGGGTTTCTGAATTTGCGTAAGTTAAAGGAATTGGATCTGTCGAATAACTTGTTAGTGGGAGAAATTCCACCAGGAAAGCCGTTGAGTGATTTTCCACGAAGCGCTTATATGGGTAACAAAGGTTTGTGTGGAAAGCCTTTAAACCCGTGTTAG 1911 41.55 MDSFHLQWVAVLISIITLSEACHPADWKGLTSFKSGISIDTSGRLAKWVGQNCCDWEGVRCHNITGRVKEINLPGFISTADLPFQSEMRGFISPSITLLNAVEIIDLGGLLGLGGTIPSFIGLRLHNLRKLYLYGNKLRGPLPESIGKLLKLEELAVHDNRLSGSLPAILGSLKTLHSLLLYGNRFSGAIPDSFADLTNLVQMDLHSNSLVGHIPDRIGQLQTLKELDLSNNFLSGKIPLSLNNLPGLSVLYLDNNKLEGPIPFASVSGKISSSLAFLRLNDNRLSGPIPQSFGELVCLKRVSLSNNKLEGTIPSSLGRLSSLSELYLDRNRFSGQIPKSLGQLSQLILLNLSHNFIKGPLPEMSSLQNIQTIDLSYNLLNLSSIPQWLSKLPSLSKIYLAGCGIHGQIPEFLRTTPSPIQELDLSHNHLTDKIPEWIGCLTQLYSLKLSENSLISQIPNSITNLQDLGVLDLHSNKLTGNIQQIFKISHRFPDDSLTYIDLSDNRFSWDFYQTDIGQQPGIQFLNLSNNNLKGRLPTSIGALRSIQTLDLSRNNLGFDLPETIVNAKQLETLKLQRNHFTGRIPKGFLNLRKLKELDLSNNLLVGEIPPGKPLSDFPRSAYMGNKGLCGKPLNPC 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2979003 2980960 + MELO3C012046.2.1 Cme10g00472 339358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00472 636 SUPERFAMILY L domain-like 22 264 - -
Cme10g00472 636 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Cme10g00472 636 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 7 636 - -
Cme10g00472 636 SMART LRR_typ_2 125 148 IPR003591 -
Cme10g00472 636 SMART LRR_typ_2 173 196 IPR003591 -
Cme10g00472 636 SMART LRR_typ_2 591 613 IPR003591 -
Cme10g00472 636 SMART LRR_typ_2 245 269 IPR003591 -
Cme10g00472 636 SMART LRR_typ_2 197 221 IPR003591 -
Cme10g00472 636 SMART LRR_typ_2 320 344 IPR003591 -
Cme10g00472 636 SMART LRR_typ_2 367 392 IPR003591 -
Cme10g00472 636 SMART LRR_typ_2 149 172 IPR003591 -
Cme10g00472 636 SMART LRR_typ_2 543 567 IPR003591 -
Cme10g00472 636 SMART LRR_typ_2 441 465 IPR003591 -
Cme10g00472 636 ProSiteProfiles Leucine-rich repeat profile. 593 615 IPR001611 GO:0005515
Cme10g00472 636 Pfam Leucine Rich Repeat 593 610 IPR001611 GO:0005515
Cme10g00472 636 Pfam Leucine Rich Repeat 127 149 IPR001611 GO:0005515
Cme10g00472 636 SUPERFAMILY L domain-like 421 635 - -
Cme10g00472 636 ProSiteProfiles Leucine-rich repeat profile. 223 246 IPR001611 GO:0005515
Cme10g00472 636 PRINTS Leucine-rich repeat signature 224 237 - -
Cme10g00472 636 PRINTS Leucine-rich repeat signature 591 604 - -
Cme10g00472 636 Pfam Leucine rich repeat 274 333 IPR001611 GO:0005515
Cme10g00472 636 Pfam Leucine rich repeat 420 478 IPR001611 GO:0005515
Cme10g00472 636 Pfam Leucine rich repeat 175 232 IPR001611 GO:0005515
Cme10g00472 636 SUPERFAMILY L domain-like 273 484 - -
Cme10g00472 636 Gene3D Ribonuclease Inhibitor 90 365 IPR032675 -
Cme10g00472 636 Gene3D Ribonuclease Inhibitor 366 636 IPR032675 -
Cme10g00472 636 Gene3D Ribonuclease Inhibitor 20 89 IPR032675 -
Cme10g00472 636 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 636 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00472 - - - csv:101207954 1158.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00138 Cme-Chr5:927264 Cme10g00472 Cme-Chr10:2979003 1.18E-23 dispersed
Cme08g00903 Cme-Chr8:5937643 Cme10g00472 Cme-Chr10:2979003 3.08E-125 dispersed
Cme10g00472 Cme-Chr10:2979003 Cme10g00771 Cme-Chr10:4995251 1.53E-88 dispersed
Cme10g00472 Cme-Chr10:2979003 Cme05g00654 Cme-Chr5:7055603 1.74E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g818 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g02493 Cam05g2678 Cec05g2712 Cco05g2747 Clacu05g2680 Cmu05g2535 Cre05g2650 . . . . Lsi04g00493 Csa05g02392 Chy10g00954 Cme10g00472 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014248 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00472 Cme_Chr10 FPKM 0.819765 0.558327 5.372483 4.874869 4.845464 5.420352 4.993986 5.398548 5.528457 5.342254