Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00473 ATGAGTGGATGGGATAGGGTTAGACCATCGAGTTCGAGATTTGGGCGTGGTAATTCTGCAATGCAAGAGAGGACCGCCTCTACTACAACGGTTCGACTCGGCCGAGTCCAGCCACAGGCACCTGGTCATCGCACCATCTTCTGCAATGATCGCGACGCTAATCTTCTTGTCAAATTCAAGGGGAATTCAGTTTCCACGACTAAGTACAACTTCTTCACTTTCTTTCCGAAAGGGCTGTTTGAACAGTTCAGGCGTGTGGCTAACCTATACTTTCTTACCATCTCAATCTTGTCCACCACACCCATCAGTCCCGTGCATCCCATTACAAATGTGGTCCCTTTAAGTTTGGTTCTACTCGTCTCTCTCATTAAAGAAGCATTTGAGGACTGGAAACGATTCCAGAATGATATGGCAATTAATAATAATCTTGTAGATGTGCTGCAAGATCAAAAGTGGGAGAGCGTTCCTTGGAAAAGGTTGCAGGTTGGAGACATTGTTAGGGTTCGGCAAGATGGATTTTTTCCTGCTGATCTTCTGTTCCTTGCTAGTACAAATCCAGATGGTGTCTGCTACATTGAGACCGCTAACCTTGATGGTGAGACAAATTTGAAGATTAGGAAGGCCCTGGAAAAGACCTGGGATTACCTGACTCCAGAGAAGGCATCTGAATTTAAAGGTGAAGTACAGTGCGAGCAACCAAACAATTCACTCTACACTTTCACAGGCAATGTTATCATTCAGAAGCAAACATTACCTCTCAGCCCAAACCAACTTTTATTGCGAGGATGCAGTCTCAGGAATACTGAGTATATTGTTGGGGCTGTTATTTTTACTGGCCATGAAACAAAGGTTATGATGAATGCTATGAATGTCCCCTCCAAAAGAAGTACTCTGGAAAAGAAACTTGACAAGCTTATACTTACGCTGTTTGCTACTCTATTTATCATGTGTTTGATTGGAGCCATTGGAAGTGGTGTGTTTGTAAACCAAAAGTACTACTACTTAGCTCTTGATAGGGGAGGCGAAAACCAATTCAACCCTCGCAACCGATTCCTGATGATCAAATTTATTCAATCGACCCAATACATCAATAAGGATCTAAATATGTTCCATGCTGATAGCAATACCCCTGCATTGGCCAGAACTTCCAATCTGAACGAAGAACTTGGACAGGTAGAGTACATCTTTTCAGATAAAACTGGTACTCTTACCAGGAATCTAATGGAGTTCTTTAAGTGTTCAATTGGTGGAGAGGTTTATGGCACTGGTATCACTGAAATAGAGAGGGGGATTGCTGAGCAGAATGGCTTGAAAGTGGAAGAGGCACACAAATCAGCCAATGCTGTTCAAGAAAAGGGGTTTAACTTTGATGATCCTAGGCTTATGAGAGGAGCATGGAGAAATGAGCCCAACTCTGATCTTTGTAAGGAATTTTTCAGATGCCTTGCTATTTGTCATACTGTACTCCCTGAGGGTGATGAATCCCCAGAAAAGATCACATATCAGGCAGCATCACCTGATGAGGCTGCTTTGGTGACTGCTGCTAAAAACTTTGGCTTCTTCTTTTACAGGCGTACGCCTACTACAATATATGTTCGCGAATCTCATGTCGAGAAGATGGGTAAAATCCAAGATGTTTCTTATGAAATTCTCAATGTACTTGAGTTCAATAGTGTAAGAAAGCGTCAGTCTGTGGTGTGTCGTTATTCTGATGGCAGGCTTGTCTTGTATTGCAAGGGTGCTGATACCGTTGTATATGAGAGATTGGCTGGTGGAAATGATGATCTGAAGAATATAACTAGGGAACACTTGGAGAAGTTTGGATCTTCCGGTCTGAGAACCCTGTGCCTTGCTTACAGAGATTTGCATCCCGATGTGTATGAAAGCTGGAATGAGAAATTTATTCAAGCTAAGTCTTCACTAAGAGATCGTGAAAAGAAATTGGATGAGGTTGCAGAACTTATAGAGAAAGACCTTATTTTGATTGGCTGTACTGCTATAGAAGATAAGCTTCAAGAAGGAGTACCAAACTGTATTCAGACACTTTCTAGAGCTGGTATCAAGATTTGGGTGCTAACAGGAGACAAGATGGAAACTGCTATTAATATAGCTTATGCTTGCAATTTAATAAACAATGAGATGAAACAATTTATTATCAGTTCAGAAACGGATGCAATCAGAGAAGTTGAGAACAGGGGTGACCAAGTAGAACTTGCACGTTTTATTAGAGAAGAAGTAAAAAAGGAACTGAAGAAATGCCTTGAGGAAGCACAGCAGTGTTTACATTCTGTCTCTCCACCAAAATTGGCTCTCGTTATAGATGGAAAATGTTTGATGTATGCATTAGATCCAAGTCTGCGAGTTACTTTACTAAACTTGAGCTTGAATTGTAGTTCGGTTGTTTGCTGCCGGGTTTCTCCTTTGCAGAAAGCGCAGGTGACAAGTTTGGTGAAGAAAGGTGCACAGAAAATAACACTTAGTATTGGTGATGGTGCTAATGATGTTAGCATGATTCAAGCAGCCCATGTGGGCATTGGAATAAGTGGGCAGGAGGGAATGCAAGCAGTTATGGCTAGTGATTTTGCCATTGCCCAGTTTCGTTTTCTCACAGATTTACTTCTTGTGCATGGACGATGGTCATATCTTCGAATATGCAAGGTTGTCACATACTTCTTTTACAAGAATCTTACGTTCACTTTAACTCAGTTTTGGTTTACCTTCCAAACTGGATTTTCTGGTCAAAGATTCTACGACGATTGGTTCCAGTCATTGTATAATGTCATATTCACCGCGCTACCTGTAATAATTGTTGGACTATTTGACAAGGATGTCAGTGCTTCCCTTTCCAAAAAGTACCCTGAACTCTACAGAGAGGGAATAAGAAATGTGTTTTTCAAGTGGAGAGTTGTGACAACTTGGGCTTTCTTTTCCATCTACCAATCTTTAGTCTTTTACTATTTTGTAACCGCTTCTAGTTCCAGTAGTCAATCGTCATCAGGCAAGGTGTTTGGTCTGTGGGATATCAGCACGATGACTTTCACTTGCATTGTCGTGACTGTGAATTTGCGGCTGCTTATGATCTGTAATTCAATTACTCGGTGGCACTACATTACGGTTGGGGGAAGCATTTTAGCATGGTTCCTATTTATTTTCTTATATTCCGGTATTATGACACCACATGATAGGCAGGAAAATGTATATTTCGTCATATATGTCTTAATGAGTACATTATATTTTTACGTAGCTGTTATCCTCGTTCCCGTTGTTGCACTTCTTTGTGATTTCGCTTACCAAGGCCTTCAGAGATGGTTTTTCCCCTACGATTATCAGATAGTACAAGAAATACATAGACATGAACCCGAAGGTAGAGGTACTGCAGGATTGCTTGAAATTCAAAACCATCTTACGCCGGAAGAGGCAAGAAGCTACGCCATGTCTCAACTCCCTCGAGAATTATCAAAGCATACTGGCTTTGCTTTCGACTCACCTGGCTACGAGTCATTTTTTGCGGCACAGCTTGGTATTTATGCCCCACAGAAGGCATGGGATGTTGCTAGGAGAGCCAGTGTGAAGTCAAGACCAAAGATTAGGGAAAAGAAGTAA 3603 41.55 MSGWDRVRPSSSRFGRGNSAMQERTASTTTVRLGRVQPQAPGHRTIFCNDRDANLLVKFKGNSVSTTKYNFFTFFPKGLFEQFRRVANLYFLTISILSTTPISPVHPITNVVPLSLVLLVSLIKEAFEDWKRFQNDMAINNNLVDVLQDQKWESVPWKRLQVGDIVRVRQDGFFPADLLFLASTNPDGVCYIETANLDGETNLKIRKALEKTWDYLTPEKASEFKGEVQCEQPNNSLYTFTGNVIIQKQTLPLSPNQLLLRGCSLRNTEYIVGAVIFTGHETKVMMNAMNVPSKRSTLEKKLDKLILTLFATLFIMCLIGAIGSGVFVNQKYYYLALDRGGENQFNPRNRFLMIKFIQSTQYINKDLNMFHADSNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEVYGTGITEIERGIAEQNGLKVEEAHKSANAVQEKGFNFDDPRLMRGAWRNEPNSDLCKEFFRCLAICHTVLPEGDESPEKITYQAASPDEAALVTAAKNFGFFFYRRTPTTIYVRESHVEKMGKIQDVSYEILNVLEFNSVRKRQSVVCRYSDGRLVLYCKGADTVVYERLAGGNDDLKNITREHLEKFGSSGLRTLCLAYRDLHPDVYESWNEKFIQAKSSLRDREKKLDEVAELIEKDLILIGCTAIEDKLQEGVPNCIQTLSRAGIKIWVLTGDKMETAINIAYACNLINNEMKQFIISSETDAIREVENRGDQVELARFIREEVKKELKKCLEEAQQCLHSVSPPKLALVIDGKCLMYALDPSLRVTLLNLSLNCSSVVCCRVSPLQKAQVTSLVKKGAQKITLSIGDGANDVSMIQAAHVGIGISGQEGMQAVMASDFAIAQFRFLTDLLLVHGRWSYLRICKVVTYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSASLSKKYPELYREGIRNVFFKWRVVTTWAFFSIYQSLVFYYFVTASSSSSQSSSGKVFGLWDISTMTFTCIVVTVNLRLLMICNSITRWHYITVGGSILAWFLFIFLYSGIMTPHDRQENVYFVIYVLMSTLYFYVAVILVPVVALLCDFAYQGLQRWFFPYDYQIVQEIHRHEPEGRGTAGLLEIQNHLTPEEARSYAMSQLPRELSKHTGFAFDSPGYESFFAAQLGIYAPQKAWDVARRASVKSRPKIREKK 1200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2997439 3011019 + MELO3C012044.2.1 Cme10g00473 339359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00473 1200 PRINTS P-type cation-transporting ATPase superfamily signature 828 847 - -
Cme10g00473 1200 PRINTS P-type cation-transporting ATPase superfamily signature 396 410 - -
Cme10g00473 1200 MobiDBLite consensus disorder prediction 1 35 - -
Cme10g00473 1200 CDD P-type_ATPase_APLT_Dnf-like 61 988 - -
Cme10g00473 1200 Pfam Phospholipid-translocating ATPase N-terminal 46 110 IPR032631 -
Cme10g00473 1200 Pfam Phospholipid-translocating P-type ATPase C-terminal 856 1106 IPR032630 -
Cme10g00473 1200 Gene3D - 508 661 IPR023299 GO:0000166
Cme10g00473 1200 ProSitePatterns E1-E2 ATPases phosphorylation site. 398 404 IPR018303 -
Cme10g00473 1200 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 353 1196 - -
Cme10g00473 1200 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 24 343 - -
Cme10g00473 1200 SUPERFAMILY Calcium ATPase, transmembrane domain M 54 1106 IPR023298 -
Cme10g00473 1200 Gene3D - 124 289 - -
Cme10g00473 1200 SFLD p-type atpase 378 879 IPR044492 -
Cme10g00473 1200 Pfam Cation transport ATPase (P-type) 495 588 - -
Cme10g00473 1200 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 353 1196 - -
Cme10g00473 1200 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 24 343 - -
Cme10g00473 1200 Pfam E1-E2 ATPase 142 322 - -
Cme10g00473 1200 MobiDBLite consensus disorder prediction 12 35 - -
Cme10g00473 1200 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 59 1114 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cme10g00473 1200 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 801 907 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme10g00473 1200 Gene3D - 662 868 IPR023214 -
Cme10g00473 1200 SFLD Haloacid Dehalogenase 378 879 - -
Cme10g00473 1200 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 403 667 IPR023299 GO:0000166
Cme10g00473 1200 SUPERFAMILY Calcium ATPase, transduction domain A 141 285 IPR008250 -
Cme10g00473 1200 SUPERFAMILY HAD-like 384 871 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00789 Cme-Chr5:9872982 Cme10g00473 Cme-Chr10:2997439 0 dispersed
Cme08g02098 Cme-Chr8:26574399 Cme10g00473 Cme-Chr10:2997439 0 dispersed
Cme10g00473 Cme-Chr10:2997439 Cme12g01904 Cme-Chr12:25160748 4.96E-49 dispersed
Cme10g00473 Cme-Chr10:2997439 Cme10g00310 Cme-Chr10:2035551 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00473 K14802 - csv:101207069 2309.64