Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00477 ATGAACGTCTCTCGCACGTGCTCCCTCTGCGGGAACAACGGCCACAACTCCCGCACGTGCCCGGAAGCCGACGGCACCGGCGGATTCATGTTGTTCGGAGTTAGACTAACGACGTCGGAGGGAAGTAACTCGTTTAGGAAGAGCGTTAGTATGAATAATCTGTCACAATACGCAGAGCATCCTCCAATTCAAGACTCCAACCACGCCGATGCCGGATATGCTTCCGACGACGTCGTTCACCCGTCGGACCGTTGCGGCGGCCGGAAGAGAGGGATCCCGTGGACGGAGGAAGAGCATAGGCTGTTTTTGTTGGGATTACAGAAAGTTGGGAAGGGAGATTGGAGAGGGATTTCGAGGAATTTTGTGAAGACACGTACCCCGACTCAGGTTGCAAGTCATGCTCAGAAATATTTTCTCCGACGGAATAATTTTAATCGGCGACGCCGTAGATCCAGTCTTTTCGATATCACTACTCACACCTTCACGAGCTCATCCAAGGAAGACGAGGCAATGCAGCCACCGCTGCCACCGTCACCGCCCCAAAAAGACAACACTCCAGGAAATTTCTCGGTGAAAATTCATGCAGCGAAACCACCTCCAGCCTCCGTGGTCAGCGGCGTCGTTGATAGCAAAGCCGTAGTGAGTACATTAACACTAAATTCATCAAATTATCGGGGGAAGCCATGCAATTCCAAGATCATTCGTCCAATTCCAATGCTTCCTCTATCTCCATACCCAAAATTTGCCGAATTAAACATTAACGAGAGAATCCCAGAAGACCCTTTGCCTCTAACTTTAAAGCTCTCAACTTCACACTCGGAGGGACAGTCACCGGCGGCGGCTTCACAGTCGTCCGGCAGTTTCCAGACAATGTCCGGCGGCGGAGACAGCATAGACATTGTCAGTGTTGCTTGA 915 51.37 MNVSRTCSLCGNNGHNSRTCPEADGTGGFMLFGVRLTTSEGSNSFRKSVSMNNLSQYAEHPPIQDSNHADAGYASDDVVHPSDRCGGRKRGIPWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRNNFNRRRRRSSLFDITTHTFTSSSKEDEAMQPPLPPSPPQKDNTPGNFSVKIHAAKPPPASVVSGVVDSKAVVSTLTLNSSNYRGKPCNSKIIRPIPMLPLSPYPKFAELNINERIPEDPLPLTLKLSTSHSEGQSPAAASQSSGSFQTMSGGGDSIDIVSVA 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3059754 3061805 - MELO3C012039.2.1 Cme10g00477 339363

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00477 304 MobiDBLite consensus disorder prediction 155 190 - -
Cme10g00477 304 ProSiteProfiles Myb-like domain profile. 93 138 IPR001005 -
Cme10g00477 304 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
Cme10g00477 304 ProSiteProfiles SANT domain profile. 94 142 IPR017884 -
Cme10g00477 304 ProSiteProfiles Zinc finger CCHC-type profile. 7 22 IPR001878 GO:0003676|GO:0008270
Cme10g00477 304 PANTHER KIN2 28 304 - -
Cme10g00477 304 CDD SANT 93 137 IPR001005 -
Cme10g00477 304 Gene3D - 92 144 - -
Cme10g00477 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 142 IPR017930 -
Cme10g00477 304 SUPERFAMILY Homeodomain-like 88 143 IPR009057 -
Cme10g00477 304 MobiDBLite consensus disorder prediction 155 169 - -
Cme10g00477 304 SMART sant 90 140 IPR001005 -
Cme10g00477 304 MobiDBLite consensus disorder prediction 58 86 - -
Cme10g00477 304 MobiDBLite consensus disorder prediction 266 296 - -
Cme10g00477 304 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 89 140 IPR006447 GO:0003677
Cme10g00477 304 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 28 304 - -
Cme10g00477 304 MobiDBLite consensus disorder prediction 265 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00477 - - - csv:101207806 537.339
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00477 Cme-Chr10:3059754 Cme02g01760 Cme-Chr2:24527011 9.89E-35 dispersed
Cme01g02899 Cme-Chr1:35680266 Cme10g00477 Cme-Chr10:3059754 8.11E-49 transposed
Cme02g00226 Cme-Chr2:1817845 Cme10g00477 Cme-Chr10:3059754 2.49E-34 transposed
Cme03g02153 Cme-Chr3:28668339 Cme10g00477 Cme-Chr10:3059754 1.22E-34 transposed
Cme06g02553 Cme-Chr6:32531281 Cme10g00477 Cme-Chr10:3059754 5.16E-43 transposed
Cme07g01804 Cme-Chr7:23472091 Cme10g00477 Cme-Chr10:3059754 6.01E-40 transposed
Cme10g00477 Cme-Chr10:3059754 Cme12g01730 Cme-Chr12:24052504 1.47E-46 wgd
Cme10g00477 Cme-Chr10:3059754 Cme02g01925 Cme-Chr2:25634711 3.30E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g806 . . . . . . . . Cmo04g01686 . . . . . Sed04g0666 . Cpe01g01422 Bhi07g01651 Tan04g1157 Cmetu10g0115 Lac13g0251 Hepe10g1689 . . Cla05g02500 Cam05g2684 Cec05g2717 Cco05g2752 Clacu05g2687 Cmu05g2541 Cre05g2656 . . . Cone12ag0614 . Csa05g02385 Chy10g00949 Cme10g00477 . . . . . . . . . . . Cma04g01608 . Car04g01650 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013797 0 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42054 PF00249 Myb_DNA-binding 1.70E-10 CL0123 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00477 Cme_Chr10 FPKM 10.228045 11.124187 3.930492 4.183392 14.762384 15.277783 15.252338 0.139352 0.134969 0.042578