Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00485 GAAGGGAAGGGAAGGCCGGGAAACATTGAAGAGAAACAACAACTAACTGCTCACTTTGAAACTGTCAGCCACCAAACTCCAAAACATAAACACATAAACAAATGTTTTCTTTACAATCATTCTCTTCTCTTCCAAACTTTCCATTTTCTCCCCAGCTTCATTTCTCTCTGTTTCTCATCTCTTAATCCTTCCATGGATTCTATGCTTCACCTTCGCCTTCATCCATGGCACCTTAATCTCTTCCTCTTCTTCCTCTCTCTTTCCCCTCTTTGTTACTGCCAACTCAACCCCCCTCAAAATATCGAAACTTTCTACCCTCCATTTATTCCTCAGCCACCGTCCCCGTCCTCTTCTTCACTTGACCATCCGCCGTCATCCACGTCGACCAAGACCATCGCCACCGCGGTGGCCGTCACTGCAGTGGGTGTTGCTCTGATTTCCACCTTGTTCTTCTTTTTAATACAGAAATATGTTATCGGAAGAAAGAGAAAAACAGAGGAGGTAAATTCAGGGACGGGTTCGGGTTTGGTAGTGCCGCCGGCGGTTGCTCAGAGTGAATTTTCGCGGGTTGATGGGAATCTTAAAGGGTTTATTGTGGATGAAAATGGGTTGGATGTGATTTATTGGAAGAGACTTGAAAAAAGGAAATCCAAAAATAGCTTTGATCGGGATGTTGAAGGTAATGTTAAGGAAAACAGAAACAAAAAGTCAGAGCCTGTTCAAGAAATTCCTCTGCTTCGAGGAAAATCTTCAACTTCGCATGTTAAAATTGCACCCGAAGATGAAGACGATACTCGGATTACATCGTCATCGCCCCCTCCGCCGCCCCATATTAACCAACCTCCGCAATTTGCTGGGAATTCTGTTCAGGCTGTTGGAAAATCACCAAGTAGTTCAAATCTTTCATCAACGGCACCACCGCAATCGACGGATAATCAAGTACCTCCCACACAATCTCCAATGGCCGTTCCGCCACCGCCCCCACCTATTCCAGCCAAGACTAATTCAAGACTGCCGCCGCCTCCACCTCCCATTCCCAAGACCAATTCAAGACCACCACCACCGCCGCCGCCTATTCAAACGAAGACCAACTCAGCAGGACCACCTCCCCCTCCTATACCGGCCAAGGCAAATCCGTCAGCACCACCGCCACCACCGCCCAAGGCCGGCGGTTCAAAATTACCCTTAAGGCCTGCACCTCCAAAGGAGAGTAACAAATCTTCTGGAGAGGCTTCTTCATCAGCCGACAATGGTCAGGTTAAAATGAAGCCCCTGCATTGGGATAAAGTGAACACTGCCAATGCCGATCATTCCATGGTTTGGGACAAAATGAGCGCCGGTTCTTTCAAATTCGATGGGGATCTTATGGAAGCTCTGTTTGGATATGTTGCAACCAACCGGAAATCCCCCCGGAGTGAAGCTAGTTCTTCAGCAAACGCCGTTGGCCGGAACTCGGGGCCGTCGCAAACTTTCATTCTTGAACCGAAAAAATCTCAGAACATAGCCATTGTAATCAAGTCCTTAACAGTTCCTCGCAACGAAATCCTCGATGCGCTCAACGAAGGTCATGGCCTGGAAACAGAGGTTCTTGAAAAACTCACAAGAATTGCTCTGACTCAAGAAGAAATTTCCCAAATTCTTGCTTACAGAGGAGATCCCCAGAAGCTAGCTGATGCTGAATCGTTCCTTTACCATCTTCTCAAATCGGTTCCATCGGCGTTTACGCGCTTCAACGCCATGCTTTTCCGATTGAATTTTACATCAGAGATTCTCCATCTCAAGGAATCTCTACAAACTCTGGAATCCGCTTGCAAGGAGCTTAGAACAAGAGGATTGTTTATGAAACTTCTTGAAGCAATTCTTAAAGCTGGAAACCGGTTGAATGCAGGAACTGCAAGAGGAAATGCCAGAGCTTTCAATCTTACAGCTCTTCGAAAGCTCTCTGATGTTCGAAGCACTGATGGTAAAACCACTTTGCTTCATTTTGTAGTCCAGGAAGTGATCAGGGCAGAAGGGAAAAGGTGTGTTTTAAACAGGAACAAGAGCTTGAGTCGTAATAGTAGCCGTAGCAGCGATAATAGCTTTAGCAGCTTAGAAAACTCGACTGCGAAGGAGGACAAAGTGAAGGAATACATGATGTTGGGATTGCCGGTGGTGGGAGGTCTAAGCTCCGAATTCTCTCATGTAAAGAAAGCGTCAGCAATCGACTACGAGAGCTTCGTTAAGGCTGGGACGTCCCTGACTAGTCGAACCGAAGAAATCCGGAAGCTCTTGACTCAAATGGGGAACAACGAAGGTGGGTTTACGAAGGAAATGAGAGAATTTCTTGACGCATCAGAGGATGAGCTGAAGAAGGTGAGAGAAGAACAAACGAAGGTGATGGATTTAGTGATGAAGACAACAGAGTATTATCAGGCAGGAAGTTCTAAAGATAAAGAAACAAATCGGCTTCAATTATTTATTATAATTAAAGATTTTCTAGAAATGGTAGATCGAGTTTGTGTTGAAATTACTCGAGATCTCCAGAGGAAGAGATCGTCAGCAGTAAATGCAGGTTCCAGTTCGGGTTCGGGTTCTTCCCCGGGAAGATCAAAAGCAATTTTCCATAACTTGCCGGAAAATTTTATGTCAGACAAGTCTAGAGGGAGTTCTAGTGATACAGATGATGAATTCTGA 2676 45.63 EGKGRPGNIEEKQQLTAHFETVSHQTPKHKHINKCFLYNHSLLFQTFHFLPSFISLCFSSLNPSMDSMLHLRLHPWHLNLFLFFLSLSPLCYCQLNPPQNIETFYPPFIPQPPSPSSSSLDHPPSSTSTKTIATAVAVTAVGVALISTLFFFLIQKYVIGRKRKTEEVNSGTGSGLVVPPAVAQSEFSRVDGNLKGFIVDENGLDVIYWKRLEKRKSKNSFDRDVEGNVKENRNKKSEPVQEIPLLRGKSSTSHVKIAPEDEDDTRITSSSPPPPPHINQPPQFAGNSVQAVGKSPSSSNLSSTAPPQSTDNQVPPTQSPMAVPPPPPPIPAKTNSRLPPPPPPIPKTNSRPPPPPPPIQTKTNSAGPPPPPIPAKANPSAPPPPPPKAGGSKLPLRPAPPKESNKSSGEASSSADNGQVKMKPLHWDKVNTANADHSMVWDKMSAGSFKFDGDLMEALFGYVATNRKSPRSEASSSANAVGRNSGPSQTFILEPKKSQNIAIVIKSLTVPRNEILDALNEGHGLETEVLEKLTRIALTQEEISQILAYRGDPQKLADAESFLYHLLKSVPSAFTRFNAMLFRLNFTSEILHLKESLQTLESACKELRTRGLFMKLLEAILKAGNRLNAGTARGNARAFNLTALRKLSDVRSTDGKTTLLHFVVQEVIRAEGKRCVLNRNKSLSRNSSRSSDNSFSSLENSTAKEDKVKEYMMLGLPVVGGLSSEFSHVKKASAIDYESFVKAGTSLTSRTEEIRKLLTQMGNNEGGFTKEMREFLDASEDELKKVREEQTKVMDLVMKTTEYYQAGSSKDKETNRLQLFIIIKDFLEMVDRVCVEITRDLQRKRSSAVNAGSSSGSGSSPGRSKAIFHNLPENFMSDKSRGSSSDTDDEF 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3114817 3117773 - MELO3C012032.2.1 Cme10g00485 339371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00485 891 MobiDBLite consensus disorder prediction 845 864 - -
Cme10g00485 891 MobiDBLite consensus disorder prediction 845 891 - -
Cme10g00485 891 Coils Coil 769 789 - -
Cme10g00485 891 SMART it6_source 412 845 IPR015425 -
Cme10g00485 891 MobiDBLite consensus disorder prediction 467 491 - -
Cme10g00485 891 ProSiteProfiles Formin homology-2 (FH2) domain profile. 412 856 IPR015425 -
Cme10g00485 891 PANTHER FORMIN-LIKE PROTEIN 4 77 360 - -
Cme10g00485 891 PANTHER FORMIN-LIKE PROTEIN 4 350 887 - -
Cme10g00485 891 MobiDBLite consensus disorder prediction 468 491 - -
Cme10g00485 891 MobiDBLite consensus disorder prediction 219 420 - -
Cme10g00485 891 MobiDBLite consensus disorder prediction 282 317 - -
Cme10g00485 891 MobiDBLite consensus disorder prediction 682 701 - -
Cme10g00485 891 Pfam Formin Homology 2 Domain 415 831 IPR015425 -
Cme10g00485 891 Coils Coil 590 610 - -
Cme10g00485 891 MobiDBLite consensus disorder prediction 405 419 - -
Cme10g00485 891 Gene3D Formin, FH2 domain 432 853 IPR042201 -
Cme10g00485 891 MobiDBLite consensus disorder prediction 318 394 - -
Cme10g00485 891 MobiDBLite consensus disorder prediction 219 242 - -
Cme10g00485 891 SUPERFAMILY Formin homology 2 domain (FH2 domain) 488 844 - -
Cme10g00485 891 PANTHER FORMIN-RELATED 350 887 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cme10g00485 891 PANTHER FORMIN-RELATED 77 360 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00485 - - - csv:101208197 1239.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01290 Cme-Chr3:22471660 Cme10g00485 Cme-Chr10:3114817 2.02E-13 dispersed
Cme10g00485 Cme-Chr10:3114817 Cme11g00355 Cme-Chr11:3644288 5.93E-95 dispersed
Cme10g00485 Cme-Chr10:3114817 Cme12g01971 Cme-Chr12:25543931 7.65E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g795 . . . . . Bpe10g00820 . Bma15g00202 Cmo04g01676 . . . . . Sed08g1729 . Cpe01g01416 Bhi07g01666 Tan04g1167 Cmetu03g1719 Lac13g0243 Hepe10g1681 . . Cla05g02507 Cam05g2691 Cec05g2724 Cco05g2759 Clacu05g2694 Cmu05g2548 Cre05g2663 . . Cone6ag0623 Cone9ag0638 Lsi04g00506 Csa05g02377 Chy10g00942 Cme10g00485 . . . . Bpe11g01744 . . . . . . Cma04g01601 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme10g01384 . 220 696 FH2 protein (formin) Gene Family AT3G25500 65.2 5.9e-161 565.5
Cme11g00355 . 475 894 FH2 protein (formin) Gene Family AT3G25500 63.0 4.0e-141 499.6
Cme02g00090 . 500 893 FH2 protein (formin) Gene Family AT3G25500 51.7 4.7e-102 369.8
Cme11g00355 . 475 910 FH2 protein (formin) Gene Family AT2G43800 55.4 8.9e-126 448.4
Cme04g00799 . 445 591 FH2 protein (formin) Gene Family AT4G15200 65.5 1.2e-46 184.5
Cme11g00755 . 334 599 FH2 protein (formin) Gene Family AT4G15200 54.4 1.3e-38 157.9
Cme04g00799 . 7 953 FH2 protein (formin) Gene Family AT5G54650 50.2 4.1e-171 599.0
Cme11g00355 . 35 913 FH2 protein (formin) Gene Family AT5G67470 56.5 8.1e-228 787.3
Cme10g01384 . 258 678 FH2 protein (formin) Gene Family AT5G67470 62.3 1.4e-126 451.1
Cme02g00090 . 500 895 FH2 protein (formin) Gene Family AT5G67470 50.7 3.0e-105 380.2
Cme10g00485 . 403 890 FH2 protein (formin) Gene Family AT1G59910 52.5 6.8e-129 458.8
Cme11g00355 . 496 871 FH2 protein (formin) Gene Family AT5G48360 50.3 6.9e-90 328.9
Cme04g00799 . 451 864 FH2 protein (formin) Gene Family AT3G05470 51.2 2.0e-106 384.0
Cme11g00355 . 472 870 FH2 protein (formin) Gene Family AT3G05470 51.8 5.9e-106 382.5
Cme04g01449 . 893 1204 FH2 protein (formin) Gene Family AT1G42980 50.5 1.7e-68 256.5
Cme04g01449 . 1 1211 FH2 protein (formin) Gene Family AT1G31810 66.8 0.0e+00 1245.7
Cme07g00118 . 1 428 FH2 protein (formin) Gene Family AT1G31810 52.3 2.3e-132 470.7
Cme02g01861 CCT 1014 1335 FH2 protein (formin) Gene Family AT5G07650 75.2 4.0e-130 462.6
Cme12g01971 CCT 980 1290 FH2 protein (formin) Gene Family AT5G07650 69.5 1.6e-118 424.1
Cme02g01069 . 867 1186 FH2 protein (formin) Gene Family AT5G07650 62.0 1.9e-108 390.6
Cme04g01449 . 877 1208 FH2 protein (formin) Gene Family AT5G07650 58.4 1.2e-105 381.3
Cme02g01861 CCT 941 1328 FH2 protein (formin) Gene Family AT5G07770 69.4 3.8e-141 498.8
Cme12g01971 CCT 903 1290 FH2 protein (formin) Gene Family AT5G07770 62.7 1.8e-127 453.4
Cme02g01069 . 790 1178 FH2 protein (formin) Gene Family AT5G07770 56.7 2.7e-115 412.9
Cme04g01449 . 813 1202 FH2 protein (formin) Gene Family AT5G07770 54.7 2.0e-113 406.8
Cme02g01069 . 797 1187 FH2 protein (formin) Gene Family AT3G32400 68.4 6.6e-147 517.7
Cme02g01861 CCT 941 1335 FH2 protein (formin) Gene Family AT3G32400 65.7 1.3e-142 503.4
Cme04g01449 . 813 1207 FH2 protein (formin) Gene Family AT3G32400 65.7 2.7e-140 495.7
Cme12g01971 CCT 873 1293 FH2 protein (formin) Gene Family AT3G32400 57.6 2.3e-131 466.1
Cme07g00118 . 1 575 FH2 protein (formin) Gene Family AT2G25050 58.6 1.3e-190 664.1
Cme02g01861 CCT 942 1335 FH2 protein (formin) Gene Family AT5G07780 63.3 4.3e-124 441.8
Cme12g01971 CCT 904 1293 FH2 protein (formin) Gene Family AT5G07780 56.9 8.5e-112 401.0
Cme04g01449 . 814 1203 FH2 protein (formin) Gene Family AT5G07780 51.7 3.3e-100 362.5
Cme02g01069 . 797 1178 FH2 protein (formin) Gene Family AT5G07780 53.3 4.4e-100 362.1
Cme02g01861 CCT 1 1344 FH2 protein (formin) Gene Family AT5G07740 51.2 0.0e+00 1154.8
Cme07g00118 . 1 403 FH2 protein (formin) Gene Family AT5G07740 62.6 1.5e-142 505.0
Cme02g01861 CCT 1013 1342 FH2 protein (formin) Gene Family AT5G07760 74.7 1.1e-128 458.0
Cme12g01971 CCT 979 1293 FH2 protein (formin) Gene Family AT5G07760 69.3 1.2e-116 417.9
Cme02g01069 . 866 1186 FH2 protein (formin) Gene Family AT5G07760 64.4 1.1e-109 394.8
Cme04g01449 . 887 1208 FH2 protein (formin) Gene Family AT5G07760 59.4 2.1e-103 374.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007048 1 1 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00485 Cme_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.558368 0.537063 0.38473